Detailed information NTG1028038

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: AB4922_RS12235
• Genome accession: NZ_CP162911
• Coordinates: 2372840..2375224 (-)
• Length: 794 a.a.
• NCBI ID: WP_368774565.1
• Uniprot ID: A0AB39IUR8
• Organism: Bacillus aerius strain KW1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2367840..2380224

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB4922_RS12200 (AB4922_12200)	-	2368748..2369476 (+)	729	WP_007501456.1	amino acid ABC transporter ATP-binding protein	-
AB4922_RS12205 (AB4922_12205)	-	2369491..2370300 (+)	810	WP_008342689.1	transporter substrate-binding domain-containing protein	-
AB4922_RS12210 (AB4922_12210)	-	2370381..2371034 (+)	654	WP_007501460.1	amino acid ABC transporter permease	-
AB4922_RS12215 (AB4922_12215)	-	2371050..2371700 (+)	651	WP_008342693.1	amino acid ABC transporter permease	-
AB4922_RS12220 (AB4922_12220)	-	2371739..2371870 (-)	132	WP_008342695.1	YrzQ family protein	-
AB4922_RS12225 (AB4922_12225)	-	2371891..2372082 (-)	192	WP_003216308.1	hypothetical protein	-
AB4922_RS12230 (AB4922_12230)	-	2372096..2372554 (-)	459	WP_336750311.1	PRC-barrel domain-containing protein	-
AB4922_RS12235 (AB4922_12235)	recD2	2372840..2375224 (-)	2385	WP_368774565.1	ATP-dependent RecD-like DNA helicase	Machinery gene
AB4922_RS12240 (AB4922_12240)	-	2375244..2375897 (-)	654	WP_368774566.1	tetratricopeptide repeat protein	-
AB4922_RS12245 (AB4922_12245)	mnmA	2375959..2377077 (-)	1119	WP_368774567.1	tRNA 2-thiouridine(34) synthase MnmA	-
AB4922_RS12250 (AB4922_12250)	-	2377172..2378314 (-)	1143	WP_008342711.1	cysteine desulfurase family protein	-
AB4922_RS12255 (AB4922_12255)	-	2378333..2378752 (-)	420	WP_008342713.1	Rrf2 family transcriptional regulator	-
AB4922_RS12260 (AB4922_12260)	-	2378959..2380224 (+)	1266	WP_008342715.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 88961.39 Da
• Isoelectric Point: 5.0188

>NTDB_id=1028038 AB4922_RS12235 WP_368774565.1 2372840..2375224(-) (recD2) [Bacillus aerius strain KW1]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGKLGNQTLHQIMRDPSVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQAYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNDYKVTEMDVANQIIALGEGKDMIIEDERCYHPSLFYAEQSVAKRIQKIVAQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPGDYKKDE
AFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEDQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASQAIPAVTLTDIYRQADGSTIVELAHDMKNGVLPKDITARSKDRSFIQCSSDQMKEVI
EKVVCNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQQILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVISFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLTETEEIMDAELAALQKELPFSVHDANIGMEGITPFDFMQE

Nucleotide

• Length: 2385 bp

>NTDB_id=1028038 AB4922_RS12235 WP_368774565.1 2372840..2375224(-) (recD2) [Bacillus aerius strain KW1]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAAGACGAACCGTTTTTAAAAGGGACGGTTCAAGCCGTTATTTTCCATAA
CGAAAGTAATTTATACTCGGTGTTAAAAGTAAAAGTCATTGAAACATCAGAGAATTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCGCTTCATGAGGAGGAAACCTACACCTTCTATGGCAAGGTCACAAGTCATCCAAAGTTTGGCGAG
CAGTTTCAAGCCACTCATTTTCAAAAGGAAGTCCCTACAACAAAGCAAGGCATCATTCATTATCTCTCTAGTGACTTGTT
TGAAGGGATTGGGAAAAAGACGGCGGAAGAAATCGTCGGCAAGCTTGGCAATCAGACGCTTCATCAAATTATGCGTGATC
CGTCTGTGTTGTATGACGTCCCTCGCCTGTCAAAAAAGAAGGCTGATAAGCTGGCTGCCGCACTTCAAGAGCATCAAGGG
CTTGAGCAAATCATGATCAGCCTGAATCAATATGGCTTTGGTCCTCAGCTTAGTATGAAGATTTACCAAGCGTACGAGAG
TGAAACGTTGCAGAAAATTGAAGAAAACCCTTATCAGCTCGTCAAAGACGTCGAGGGGATTGGATTTATTAAAGCAGATG
AACTAGGCGCTAGAACAGGGATATCTGGAAATGATCCAGAACGCATTCGTGCAGCCCTTTTGTATACCGTTGAGACAGCA
AGCCTGCAAGACGGTCATACGTACATACAAACGAAAGATCTGATCGTCGAAACCCGTAAACTACTGAATCAAACAGGCAA
TGACTACAAAGTGACTGAAATGGACGTTGCCAATCAGATCATTGCACTTGGTGAAGGGAAAGACATGATTATTGAAGATG
AGCGCTGTTATCATCCGTCGCTCTTTTATGCGGAGCAAAGTGTGGCAAAACGCATTCAAAAAATTGTCGCTCAAACGGAA
TATGCAGATCAATTTCCTGAATCAGAATTTCTTCTCGCACTCGGTGAATTGGAGGAACGGCTTGGTGTCCAGTATGCACC
AACCCAAAAAGAAGCCATTCAAAAGGCACTCATGTCTCCAATGCTGCTTTTAACAGGCGGACCGGGTACAGGGAAAACGA
CGGTCATTAAAGGGATTGTCGAGCTTTACAGCGATCTTCACGGCGTATCTCTTGACCCGGGTGATTATAAAAAAGATGAA
GCATTTCCGTTCGTGCTTGCCGCACCAACTGGACGTGCTGCGAAACGAATGACAGAATCCACTGGACTGCCTGCTGTGAC
CATTCACCGGTTGCTAGGCTGGAATGGATCAGAAGGCTTCTCACATGATGAAGACCAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCGAGTATGCTGGATATTTGGCTGGCGAACCATTTGTTTAAGGCGATCCCAGATCATATTCAAGTCATT
ATGGTTGGAGACGAACATCAACTTCCATCTGTCGGACCTGGTCAAGTGTTAAGAGACCTGCTTGCGTCACAAGCTATACC
GGCAGTTACACTAACTGATATTTACCGGCAGGCAGACGGTTCAACAATTGTTGAGCTTGCGCATGATATGAAAAATGGTG
TTTTGCCAAAGGATATTACTGCACGCTCGAAGGATCGATCCTTTATTCAATGCTCTAGTGACCAAATGAAAGAAGTCATC
GAGAAAGTGGTCTGCAATGCTGCTCAAAAGGGGTATTCAGCAAAGGACATTCAAGTGCTTGCCCCAATGTATAAAGGAAA
AGCAGGCATTAATGAACTGAATAAAATGCTTCAGCAAATTTTGAATCCTAAAAAGCCAAAAGGAAGAGAAATTCCTTTTG
GTGATGTCGTCTACCGGACAGGTGATAAGGTACTTCAGCTTGTCAATCAGCCCGAGAATAACATTTTTAATGGAGATATT
GGCGAAATTGTCTCGATCTTTTATGCGAAAGAAAACACAGAAAAAGAAGATATGGCGGTCATCTCCTTTGATGGAAATGA
AATCACGTTTACGAAAAAAGATTTTCATCAATTTACACACGCTTATTGTTGCTCGATTCATAAATCCCAGGGCAGTGAAT
TCCCAATCGTGGTGCTGCCAGTCGTGAGAAGTTATTATCGAATGCTTCGAAGAAATTTGCTTTACACGGCCATTACACGA
AGTAAAAAGTTTTTAATTTTGTGCGGCGAGGAATCAGCATTAGAGTGGGGCGTGAAAAATAATGAAGACTCCCTCAGACA
AACGTCTTTAACCATGCGTCTTACTGAAACGGAAGAAATCATGGACGCTGAGCTAGCAGCCCTCCAAAAAGAACTTCCTT
TCAGCGTACACGATGCCAATATTGGCATGGAGGGAATCACTCCGTTTGATTTTATGCAAGAGTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-659)

• AAA domain (AAA_30) (345-553)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	80.252	100	0.804