Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB4922_RS07775 Genome accession   NZ_CP162911
Coordinates   1525695..1526474 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus aerius strain KW1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1520695..1531474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4922_RS07755 (AB4922_07755) trmFO 1521399..1522703 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB4922_RS07760 (AB4922_07760) xerC 1522766..1523683 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  AB4922_RS07765 (AB4922_07765) hslV 1523698..1524243 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  AB4922_RS07770 (AB4922_07770) hslU 1524260..1525660 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  AB4922_RS07775 (AB4922_07775) codY 1525695..1526474 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB4922_RS07780 (AB4922_07780) flgB 1526762..1527151 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  AB4922_RS07785 (AB4922_07785) flgC 1527151..1527603 (+) 453 WP_008344813.1 flagellar basal body rod protein FlgC -
  AB4922_RS07790 (AB4922_07790) fliE 1527615..1527932 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  AB4922_RS07795 (AB4922_07795) fliF 1527983..1529575 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  AB4922_RS07800 (AB4922_07800) fliG 1529587..1530603 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  AB4922_RS07805 (AB4922_07805) fliH 1530596..1531360 (+) 765 WP_017359090.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=1028026 AB4922_RS07775 WP_007499612.1 1525695..1526474(+) (codY) [Bacillus aerius strain KW1]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1028026 AB4922_RS07775 WP_007499612.1 1525695..1526474(+) (codY) [Bacillus aerius strain KW1]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAATCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTGCCAATCATCGGAGGCGGGGATCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment