Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AB4L27_RS10475 Genome accession   NZ_CP162907
Coordinates   2236783..2237508 (-) Length   241 a.a.
NCBI ID   WP_256950374.1    Uniprot ID   -
Organism   Vibrio diabolicus strain 3098     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2231783..2242508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4L27_RS10450 (AB4L27_10450) - 2232927..2233418 (+) 492 WP_012841219.1 type II secretion system protein M -
  AB4L27_RS10455 (AB4L27_10455) - 2233420..2234181 (+) 762 WP_256950375.1 type II secretion system protein N -
  AB4L27_RS10460 (AB4L27_10460) cysQ 2234483..2235310 (-) 828 WP_005394972.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AB4L27_RS10465 (AB4L27_10465) nudE 2235355..2235924 (-) 570 WP_005394971.1 ADP compounds hydrolase NudE -
  AB4L27_RS10470 (AB4L27_10470) nfuA 2236101..2236685 (-) 585 WP_005394968.1 Fe-S biogenesis protein NfuA -
  AB4L27_RS10475 (AB4L27_10475) comF 2236783..2237508 (-) 726 WP_256950374.1 ComF family protein Machinery gene
  AB4L27_RS10480 (AB4L27_10480) bioH 2237593..2238360 (+) 768 WP_256950373.1 pimeloyl-ACP methyl ester esterase BioH -
  AB4L27_RS10485 (AB4L27_10485) - 2238485..2238949 (+) 465 WP_005379316.1 hypothetical protein -
  AB4L27_RS10490 (AB4L27_10490) - 2239055..2241376 (-) 2322 WP_368848756.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27720.86 Da        Isoelectric Point: 9.0514

>NTDB_id=1027984 AB4L27_RS10475 WP_256950374.1 2236783..2237508(-) (comF) [Vibrio diabolicus strain 3098]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPNHTHALRWCEHCLQHLTPIKRCQRCGLTLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWRRYLSRGFNQSDVLARHLAQQLQTNFDA
KVFRRVRLAQSQRGNTKASREQNLKGAFVLNKRPPSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1027984 AB4L27_RS10475 WP_256950374.1 2236783..2237508(-) (comF) [Vibrio diabolicus strain 3098]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGTTGAGCAGTCAATGCGGTCTGTGTCGATTCCCGATTCAAAC
ACCAAACCACACGCATGCTCTGCGTTGGTGTGAGCACTGCTTACAACACCTAACTCCAATCAAGCGATGCCAACGTTGCG
GTTTAACGTTACAGAAAGAAGAGATGAGTACGGATAGTATTTGTGGTGAATGCCTTTCAGAACCACCGCCATGGCAAAGG
CTATATACGTTAGGCGATTACGACTTTCCCCTCTCACGGGAAGTCCAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAGGCATTGACCGAGCAACTGGCGCAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTACCACTGCACTGGCGGC
GCTACCTAAGCCGGGGATTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCCAGCAATTGCAAACCAATTTCGACGCG
AAGGTCTTTCGCCGGGTCAGACTCGCCCAATCACAGCGCGGCAATACTAAAGCGAGCCGTGAACAAAACCTAAAAGGCGC
GTTTGTTCTCAATAAGCGACCGCCATCTTCCCACGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.541

100

0.734
  comF Vibrio cholerae strain A1552

48.75

99.585

0.485

Multiple sequence alignment