Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AB3456_RS06460 Genome accession   NZ_CP162632
Coordinates   1354710..1357097 (+) Length   795 a.a.
NCBI ID   WP_318754904.1    Uniprot ID   -
Organism   Staphylococcus pseudoxylosus strain Hao 2022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1349710..1362097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3456_RS06440 (AB3456_06440) sal 1349955..1351586 (+) 1632 WP_119604049.1 Sal family ABC-F type ribosomal protection protein -
  AB3456_RS06445 (AB3456_06445) - 1351647..1352792 (+) 1146 WP_119604048.1 cysteine desulfurase family protein -
  AB3456_RS06450 (AB3456_06450) mnmA 1352793..1353905 (+) 1113 WP_017724651.1 tRNA 2-thiouridine(34) synthase MnmA -
  AB3456_RS06455 (AB3456_06455) - 1354041..1354706 (+) 666 WP_017724650.1 tetratricopeptide repeat protein -
  AB3456_RS06460 (AB3456_06460) recD2 1354710..1357097 (+) 2388 WP_318754904.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AB3456_RS06465 (AB3456_06465) alaS 1357446..1360076 (+) 2631 WP_017724648.1 alanine--tRNA ligase -
  AB3456_RS06470 (AB3456_06470) - 1360145..1360405 (+) 261 WP_017724647.1 IreB family regulatory phosphoprotein -
  AB3456_RS06475 (AB3456_06475) ruvX 1360409..1360837 (+) 429 WP_017724646.1 Holliday junction resolvase RuvX -
  AB3456_RS06480 (AB3456_06480) - 1360854..1361180 (+) 327 WP_017724645.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89634.16 Da        Isoelectric Point: 4.5084

>NTDB_id=1027720 AB3456_RS06460 WP_318754904.1 1354710..1357097(+) (recD2) [Staphylococcus pseudoxylosus strain Hao 2022]
MENPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESNETFDSMPTIVGFFPDIAEGDVYTFKGQVVTHAKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAISDILNDPTVLEKVPSLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVENKPYQLVYDVKGIGFNKADTLARNVGIQFNDSERLKAGLLYVLEEECIKQG
HTYLPTNNVLEMTQDMLSQPPAELIETQQLEQVLQDLVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNFTYTNKLKEIE
QSDLLLEIGEIEDRNKVTYADSQREALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAELHGLSLDYDDYQNDDYPVVLG
APTGRASKRLSESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKMIPRVNLTEVYRQQDGSSIIELAHRMKLGEKIDITQRFHDRNFINCTTEQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQDILNPKEQDTREIEFGDIVFRKGDKVLQLVNRPSDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFVRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCVFLKAYFNNDEETESADVSKSFDSDIILSEENIFKINPMINMGEFSPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=1027720 AB3456_RS06460 WP_318754904.1 1354710..1357097(+) (recD2) [Staphylococcus pseudoxylosus strain Hao 2022]
ATGGAAAACCCTACACTATTTAACAATTCAATGATTAAAGGGACCGTTGACGCGATTTTGTTTCAAAATAAAGAAAATTT
TTATACGGTTTTAAAAGTTGATACGATTGAATCCAACGAGACATTTGATTCAATGCCTACAATTGTAGGGTTTTTTCCAG
ATATTGCTGAAGGTGACGTTTATACATTTAAAGGCCAAGTAGTTACGCATGCGAAATATGGGAAACAATTAAAGGCTGAA
ACATTTGAAAAAGAGTTACCACAAACAAAAGAAGCAATTATAAGTTATTTATCCAGTGACCTTTTTAAAGGAATAGGTAA
AAAAACAGCACAAAGTATTGTAAATAAATTAGGTGAAAATGCAATTAGCGACATATTAAATGATCCAACTGTATTAGAAA
AAGTACCTAGCTTACCTAAAAAGAAACAAAAACAAATTGCTGAACAAATTGCAAGTAATCAAGAAACAGAACAAATTATT
ATTCGTCTTCATGATTTAGGTTTTGGGCCAAAGCTAGCAATGGCTATATACCAAGCATATTTAGGCGAAACACTCAATGT
AGTTGAAAACAAGCCTTATCAACTTGTATATGACGTCAAAGGTATCGGCTTTAATAAGGCGGACACTTTAGCACGTAATG
TAGGCATTCAATTTAATGATTCAGAACGTCTTAAAGCAGGTTTACTTTACGTGCTAGAAGAAGAATGCATAAAACAAGGC
CATACATATTTACCAACTAATAATGTACTAGAGATGACTCAAGATATGTTATCACAACCGCCAGCTGAATTAATAGAAAC
ACAGCAACTTGAGCAAGTTTTACAGGATTTAGTAAATGACACTAAATTAATCCAGCAAGAAAATGAAGTCGCTATTCCAA
GTCTGTATTACTCAGAACTGAAAAGCGTACAAAATTTATACCGTAATTTTACTTATACAAACAAACTTAAAGAAATAGAG
CAATCTGATTTACTGCTTGAAATCGGTGAAATTGAAGATCGCAATAAAGTGACTTATGCAGATTCGCAAAGAGAAGCCTT
ACAAACAGCGATTAACTCTAAAATAATGTTGCTGACAGGTGGTCCAGGTACAGGAAAAACTACTGTTATTAAAGGAATTG
TTGAACTGTATGCAGAGTTGCATGGTTTATCCTTAGATTATGACGATTATCAAAATGATGATTATCCAGTAGTTTTAGGC
GCGCCAACCGGAAGAGCATCGAAGCGTTTATCAGAGTCAACTGGTTTGGAGGCTATGACGATACATCGTCTAATAGGTTG
GAATCAAGATACGCAACCAGAAGATATATTAGATAATGAAATTTCTGCAAAACTTATCATAATTGATGAAATGTCAATGG
TTGATACATGGTTATTTCATCAATTTTTAAGTGCTGTACCTATCGATGCGCAAGTTATACTAGTCGGGGATGAGGATCAA
TTGCCATCTGTTGGACCTGGTCAAGTATTTAAGGATTTAATTGACTCGAAAATGATTCCTCGTGTGAATTTAACTGAAGT
TTACCGTCAACAAGATGGTTCAAGTATTATTGAATTAGCGCACAGGATGAAGCTAGGAGAAAAGATTGATATTACACAAC
GATTTCATGATCGTAATTTTATAAACTGTACAACAGAACAGATACCCTCTGTTGTTGAAAAAGTAGTATCAAGTGCAGTG
AATAAAGGTTATGATATGAGTGATATTCAAGTATTAGCTCCGATGTATAAAGGATCTGCAGGTATAAAGAAACTAAATAC
AGTATTACAAGATATCTTGAATCCTAAAGAACAGGATACTCGAGAAATTGAGTTTGGCGACATTGTTTTTAGAAAAGGTG
ATAAGGTATTACAACTTGTTAACCGACCAAGCGATAATATATTTAATGGTGATATTGGAGTTATTGTAGGTATCTTCTGG
GCTAAAGAAAATGCGTTAAACAAAGATGTTTTGGTAGTTGATTTTGAAGGTAACGAGATTACGTTTGTTCGGCAAGATTT
AATGGAATTAACACACGCTTATTGTACATCAATTCATAAGTCACAAGGTTCAGAATTTCCAATCGTTATTATGCCAATGG
TTAAACAGTACTTTAGAATGCTTCAAAAACCTATATTATATACAGGTTTAACCCGTGCCAAACAGTCACTTGTGTTCTTA
GGAGACCCACAAGCATTCGATATTGGCCTAAAGACTCATGGCCAAGTGAGAATGACACAATTGTGTGTGTTTCTTAAAGC
GTATTTTAATAATGATGAAGAAACTGAAAGTGCTGATGTCAGTAAATCCTTTGATTCAGATATTATATTGTCTGAAGAAA
ATATATTTAAAATAAATCCAATGATTAATATGGGGGAATTTTCCCCGTATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.314

100

0.503

Multiple sequence alignment