Detailed information    

insolico Bioinformatically predicted

Overview


Name   recJ   Type   Machinery gene
Locus tag   AB3Z07_RS18635 Genome accession   NZ_CP162630
Coordinates   3767525..3769879 (-) Length   784 a.a.
NCBI ID   WP_368657449.1    Uniprot ID   -
Organism   Metabacillus halosaccharovorans strain Hao 2024     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 3762525..3774879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Z07_RS18620 (AB3Z07_18620) dtd 3763974..3764414 (-) 441 WP_368657448.1 D-aminoacyl-tRNA deacylase -
  AB3Z07_RS18625 (AB3Z07_18625) - 3764433..3766643 (-) 2211 WP_078432437.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  AB3Z07_RS18630 (AB3Z07_18630) - 3766996..3767508 (-) 513 WP_216774516.1 adenine phosphoribosyltransferase -
  AB3Z07_RS18635 (AB3Z07_18635) recJ 3767525..3769879 (-) 2355 WP_368657449.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AB3Z07_RS18640 (AB3Z07_18640) - 3769964..3770284 (-) 321 WP_368657450.1 lipopolysaccharide assembly LapA domain-containing protein -
  AB3Z07_RS18645 (AB3Z07_18645) secDF 3770468..3772711 (-) 2244 WP_368657451.1 protein translocase subunit SecDF -
  AB3Z07_RS18650 (AB3Z07_18650) - 3772829..3773122 (-) 294 WP_226526347.1 post-transcriptional regulator -
  AB3Z07_RS18655 (AB3Z07_18655) spoVB 3773268..3774839 (+) 1572 WP_368657452.1 stage V sporulation protein B -

Sequence


Protein


Download         Length: 784 a.a.        Molecular weight: 88088.70 Da        Isoelectric Point: 5.0941

>NTDB_id=1027682 AB3Z07_RS18635 WP_368657449.1 3767525..3769879(-) (recJ) [Metabacillus halosaccharovorans strain Hao 2024]
MLKANTRWMIQSSDETFIQNLRENLSVTPLVASLLVNRGINSVEAAQEFLDTDSQTFHDPFLLKDMDKAVQRIQEAIHNN
EHILVYGDYDADGVSSTTVLLTTLRKLGAKADFYIPNRFSEGYGPNEAAFRLAHERGFSLIITVDTGIAAVHEAEISKGL
GVDLIITDHHEPGPVLPDALAIIHPKQPECTYPFKELAGVGVAFKLSHALLGEVPTDLLEVAAIGTIADLVALHGENRLI
AKRGINQLKTTNRIGLKALLKIANVKLQEINEDTIGFALGPRINAVGRLQSADPAVDLLLSDNEEEAMMIAEEIDLLNKE
RQKLVNTMTEEAIEEVNTRFPIEQNPVIVIAKEGWNPGVVGIVASRLVDRFYRPTIVLSIDKEKGIAKGSARSIVGFDLF
ENLSTCRDILPHFGGHPMAAGMTLQLEDVNELRERLVEKAHMILTEDDFIPVTRVDVSCKLEDITVKSIEEMQQLSPFGM
NNPKPIIHLEDMTLANVRKIGAEQNHLKIVFSKEEQQLDCVGFGMGYIHDELSPAVAVSAIGELTINEWNNLRKPQIMLK
DLKVNQWQLFDFRGSRNVDHLISLLSSNEAGQLITFQSKTYEELAQRGLDHKALLVQSDEDAKNLDARDKHLLLLDIPSS
IELLDGLFSKGKPSRIYSVFQQETDHFFSTIPTRDHFKWYYGFLLKQGSFKLREQGELLAKHKGWTKETIEFMSQVFFEL
EFVTIENGVISTNSTSRKRDLSESKTYAQKQNQIELEKTLLYTSYMQLKQWFEQRFPLDAPVGV

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=1027682 AB3Z07_RS18635 WP_368657449.1 3767525..3769879(-) (recJ) [Metabacillus halosaccharovorans strain Hao 2024]
ATGTTAAAGGCAAATACAAGGTGGATGATTCAATCATCTGATGAAACCTTCATTCAAAATTTAAGAGAGAATTTATCGGT
GACACCGCTGGTAGCTTCTTTACTAGTAAATAGAGGAATTAACTCTGTCGAAGCTGCACAGGAATTTTTAGATACGGACT
CACAAACTTTTCATGATCCATTTCTCTTAAAAGATATGGACAAAGCTGTGCAACGTATTCAAGAGGCAATTCATAATAAT
GAACATATATTGGTTTATGGTGATTATGATGCAGATGGAGTAAGTAGTACGACCGTTTTATTAACTACATTACGAAAATT
AGGTGCTAAAGCAGATTTTTATATACCAAATCGATTTTCGGAAGGATATGGACCAAATGAGGCAGCATTTAGATTAGCTC
ATGAACGGGGCTTTTCACTAATCATTACGGTTGATACCGGTATTGCTGCAGTTCATGAAGCAGAAATTTCGAAGGGGTTA
GGTGTGGATTTAATTATCACTGACCACCATGAACCAGGTCCAGTTTTACCTGATGCACTAGCAATCATACATCCTAAACA
GCCGGAATGCACGTATCCATTTAAGGAATTGGCCGGTGTAGGTGTAGCATTTAAATTAAGCCATGCACTGTTGGGGGAAG
TTCCAACAGATTTATTAGAGGTTGCGGCAATTGGCACAATTGCCGATTTAGTTGCCCTGCATGGAGAAAATAGATTAATA
GCAAAACGTGGTATAAACCAATTAAAAACAACAAATCGGATTGGGTTAAAAGCTCTATTAAAAATTGCCAATGTAAAGCT
GCAAGAAATAAATGAAGATACAATTGGTTTTGCTCTTGGTCCTAGAATTAATGCTGTTGGAAGATTACAATCTGCAGATC
CAGCTGTCGACTTACTTCTTTCTGATAATGAAGAAGAAGCAATGATGATTGCTGAAGAAATAGACTTACTTAATAAAGAA
AGACAAAAACTAGTGAATACAATGACTGAGGAAGCTATTGAAGAGGTTAATACACGCTTTCCAATTGAGCAAAATCCTGT
CATTGTTATTGCTAAAGAAGGCTGGAATCCAGGTGTTGTTGGGATTGTAGCTTCAAGATTAGTCGATCGTTTTTATAGGC
CGACAATTGTTTTAAGTATTGATAAAGAAAAAGGGATCGCAAAGGGATCAGCACGAAGTATTGTAGGCTTTGATTTGTTT
GAAAATTTATCAACATGCCGTGATATTTTACCTCATTTCGGCGGACATCCCATGGCTGCAGGTATGACATTACAACTTGA
AGATGTAAATGAGCTTCGTGAAAGACTGGTAGAAAAAGCACATATGATTTTGACAGAAGATGATTTTATTCCTGTTACAC
GAGTTGATGTTAGCTGTAAGTTAGAGGATATAACTGTTAAGTCTATAGAAGAAATGCAGCAGTTATCACCGTTTGGTATG
AATAATCCAAAACCGATTATTCATTTGGAAGATATGACATTGGCTAATGTCCGTAAAATAGGGGCAGAGCAAAATCATTT
AAAGATCGTCTTTTCAAAAGAAGAACAGCAACTCGATTGTGTTGGTTTCGGTATGGGGTATATTCATGATGAGCTATCAC
CTGCTGTTGCTGTATCTGCTATTGGAGAGCTTACAATAAATGAATGGAATAACTTGAGAAAACCGCAAATTATGCTGAAG
GATTTAAAAGTAAATCAATGGCAGCTGTTTGACTTTCGCGGTTCCAGAAATGTTGATCATCTTATTAGCTTACTTTCATC
CAATGAAGCTGGACAGCTTATTACATTTCAGTCAAAAACATATGAAGAATTAGCGCAAAGGGGACTGGATCATAAAGCAC
TTTTAGTACAATCCGATGAAGATGCAAAAAATCTTGATGCCCGTGACAAACATCTTCTTTTACTTGACATTCCTTCTTCA
ATCGAATTATTGGACGGGCTTTTTTCAAAAGGTAAACCTTCAAGAATTTATTCTGTGTTTCAACAAGAAACGGATCACTT
TTTTTCGACAATACCGACAAGGGATCATTTTAAATGGTACTATGGTTTCCTGCTAAAGCAAGGTTCCTTTAAGCTTCGTG
AACAAGGTGAGCTTCTGGCGAAACACAAAGGCTGGACAAAAGAAACAATAGAATTTATGTCACAGGTGTTTTTTGAGCTA
GAATTTGTTACAATAGAAAATGGTGTTATTTCGACAAATTCCACATCTCGAAAAAGAGATTTAAGTGAATCGAAAACGTA
TGCCCAAAAGCAAAACCAAATTGAACTAGAAAAAACGTTATTATATACATCTTACATGCAGCTTAAGCAGTGGTTTGAAC
AAAGGTTTCCATTAGATGCGCCTGTAGGTGTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

57.949

99.49

0.577


Multiple sequence alignment