Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AB3U99_RS16325 Genome accession   NZ_CP162613
Coordinates   3380653..3383016 (-) Length   787 a.a.
NCBI ID   WP_400242610.1    Uniprot ID   -
Organism   Niallia tiangongensis strain JL1B1071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3375653..3388016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3U99_RS16305 (AB3U99_16320) - 3375741..3377936 (-) 2196 WP_400242606.1 RelA/SpoT family protein -
  AB3U99_RS16310 (AB3U99_16325) - 3378155..3379159 (+) 1005 WP_400242607.1 transposase -
  AB3U99_RS16315 (AB3U99_16330) - 3379089..3379739 (+) 651 WP_400242608.1 hypothetical protein -
  AB3U99_RS16320 (AB3U99_16335) - 3380150..3380662 (-) 513 WP_400242609.1 adenine phosphoribosyltransferase -
  AB3U99_RS16325 (AB3U99_16340) recJ 3380653..3383016 (-) 2364 WP_400242610.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AB3U99_RS16330 (AB3U99_16345) - 3383227..3383526 (-) 300 WP_400242611.1 lipopolysaccharide assembly LapA domain-containing protein -
  AB3U99_RS16335 (AB3U99_16350) secDF 3384074..3386326 (-) 2253 WP_400242612.1 protein translocase subunit SecDF -
  AB3U99_RS16340 (AB3U99_16355) - 3386729..3387028 (-) 300 WP_400242613.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 89070.93 Da        Isoelectric Point: 5.0579

>NTDB_id=1027524 AB3U99_RS16325 WP_400242610.1 3380653..3383016(-) (recJ) [Niallia tiangongensis strain JL1B1071]
MLRSKKRWIQEEIPNKEKASVLAEELKISPIVASLLLSRGYHTTQEAKAFLYDDNNEFHDPFLLLEMDIAVERIRKAIAN
KESILIFGDYDADGVTSTTVMMKTLESLGANVDFYIPNRFTEGYGPNEGAFRYAKSIGVQLIITVDTGIAAVHEAQVAKE
LEIDLIITDHHEPGPILPEALAIIHPKIDGSEYPFRDLAGVGVSFKLSHALLGNAPHHLLPFAAIGTIADLVSLTGENRL
LAKKGIKALQETDNIGLNALYRQMNVEKNAINEETIGFMLAPRINAIGRLGSADPAVELLLTDDPDLAKELALEMEETNK
ERQAIVNQITEEAIAQVEQYYPLTENNVLIVGKEGWNPGVVGIVASRLVEKFYRPTIVLSFDYEKGIAKGSARSIEGFDL
YHNLSTCRDILPHFGGHPMAAGMSLKIDDVEVLRNSLNKLAFEQLTKENLVPLTKVDGSFSLKEISIKSIEDMQMLAPFG
VDNPKPKLTFRDLEVDNMRKIGSNQNHLKIILKQDEFDLDGIGFGIGDLCDHISPSAKVSVLGELSINEWNNRKKPQIFI
QDIEVSHWQLFDYRSLRKMDHLYETVPSDARWIFFHQDSVPKGMEQRVSYQVIETIEDARLLASIDKSIVLADYPPSLDM
LKTLLVNNQPARIYAVFYKQQSDFFSTMPTRDHFKWFYAFLAKQGTFHLEKFGGELARRKGWSKETVDFMSKVFFELNFV
TMKDGFVSLNKNVPKRDLSESISFQQKQAQFELENELIYSSYEQLKNWFDLILIKSVNNEEEVKEWI

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=1027524 AB3U99_RS16325 WP_400242610.1 3380653..3383016(-) (recJ) [Niallia tiangongensis strain JL1B1071]
ATGTTACGTTCTAAAAAAAGATGGATACAAGAAGAAATCCCAAATAAAGAAAAAGCTTCTGTATTAGCAGAAGAATTAAA
AATATCCCCAATTGTTGCCTCTCTATTACTATCAAGAGGATATCATACAACACAAGAGGCAAAAGCATTTTTATATGATG
ATAATAATGAATTTCATGACCCGTTTTTGTTATTAGAAATGGACATAGCGGTGGAAAGAATACGAAAAGCAATCGCTAAT
AAGGAATCAATTTTAATCTTTGGTGATTATGACGCGGATGGGGTAACCAGTACAACTGTAATGATGAAAACATTAGAGAG
TCTTGGTGCCAATGTGGACTTTTATATTCCAAACCGATTTACAGAAGGATATGGCCCAAATGAAGGTGCTTTTCGCTATG
CAAAAAGCATTGGTGTGCAATTAATAATTACGGTTGATACAGGAATTGCTGCTGTTCATGAAGCACAAGTGGCAAAAGAA
TTAGAGATAGATTTAATCATTACAGATCACCATGAGCCGGGCCCGATATTGCCAGAGGCTCTTGCAATTATCCACCCGAA
AATAGATGGCAGTGAGTATCCTTTTCGTGATTTAGCAGGGGTTGGTGTTTCCTTCAAGCTATCCCATGCCCTACTTGGCA
ATGCTCCCCATCATTTATTGCCATTTGCTGCAATAGGAACAATTGCTGATCTTGTTTCTTTAACTGGCGAGAATCGCCTC
CTTGCAAAAAAAGGGATAAAGGCATTACAAGAAACGGATAATATTGGCTTAAATGCTTTATATCGCCAAATGAATGTGGA
GAAAAATGCAATTAATGAAGAAACAATCGGATTTATGCTAGCGCCACGAATAAATGCAATCGGTAGACTTGGTAGTGCGG
ATCCTGCTGTGGAGCTATTACTAACAGATGATCCAGATCTAGCAAAAGAACTTGCACTAGAAATGGAAGAAACGAATAAA
GAGAGACAAGCAATTGTTAATCAAATAACAGAGGAAGCTATCGCGCAAGTGGAACAATATTATCCTTTAACGGAAAATAA
TGTTCTTATTGTTGGAAAAGAAGGCTGGAATCCTGGTGTAGTCGGAATAGTTGCTTCCAGATTAGTGGAGAAATTTTACC
GTCCAACGATTGTATTAAGCTTTGATTATGAAAAAGGAATCGCCAAAGGATCTGCGCGGAGTATAGAAGGCTTTGATTTG
TATCATAATTTATCGACATGCAGAGATATACTCCCCCATTTTGGTGGACATCCTATGGCGGCAGGAATGTCATTAAAAAT
AGATGATGTAGAAGTGCTGAGAAATAGTTTAAATAAATTAGCATTTGAACAACTAACGAAAGAAAATCTCGTGCCGCTAA
CAAAGGTGGATGGAAGCTTTTCTCTAAAAGAGATTTCCATCAAATCAATAGAAGATATGCAAATGCTTGCTCCGTTTGGG
GTGGATAATCCCAAGCCAAAATTGACATTTCGTGACCTAGAAGTAGACAATATGAGGAAAATAGGCTCAAATCAAAACCA
TTTAAAGATTATCCTAAAGCAAGACGAATTTGATTTAGATGGAATAGGGTTTGGAATTGGAGACCTATGTGATCATATTT
CACCGAGTGCAAAGGTATCTGTCCTTGGAGAGCTTTCAATAAATGAATGGAATAATCGTAAAAAACCACAAATCTTTATA
CAGGATATTGAGGTTTCTCACTGGCAGCTGTTTGATTATAGAAGTTTAAGGAAAATGGATCATTTATATGAAACAGTGCC
TAGTGATGCTCGTTGGATCTTTTTTCATCAAGATTCTGTTCCTAAGGGGATGGAACAACGAGTATCCTACCAGGTAATTG
AAACGATAGAGGACGCTAGATTACTTGCGTCGATAGATAAGTCTATCGTATTAGCAGATTATCCGCCAAGTTTGGATATG
TTAAAAACATTGCTAGTTAACAATCAACCAGCAAGAATCTATGCCGTTTTTTATAAACAACAAAGTGACTTTTTTAGTAC
AATGCCCACTCGAGATCATTTCAAATGGTTCTATGCATTTTTGGCAAAACAGGGAACGTTTCACCTTGAAAAATTTGGTG
GTGAGCTTGCTAGAAGAAAAGGTTGGAGTAAAGAAACGGTAGATTTTATGTCAAAGGTGTTTTTTGAATTAAATTTTGTT
ACAATGAAGGATGGATTTGTTTCATTGAATAAGAATGTACCGAAAAGAGATTTATCGGAATCAATCTCATTTCAACAAAA
GCAAGCGCAATTTGAGCTAGAAAATGAATTAATTTATTCATCTTATGAGCAACTAAAAAATTGGTTTGATCTTATTCTAA
TAAAATCCGTTAATAATGAGGAGGAAGTAAAAGAATGGATTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(456-562)

DHHA1 domain (DHHA1)

(316-440)

DHH family (DHH)

(84-209)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-769)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.767

98.729

0.521

Multiple sequence alignment