Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AB3N04_RS07385 Genome accession   NZ_CP162551
Coordinates   1150601..1152925 (-) Length   774 a.a.
NCBI ID   WP_368505457.1    Uniprot ID   A0AB39BXR4
Organism   Alkalihalophilus sp. As8PL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1145601..1157925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3N04_RS07365 (AB3N04_07365) - 1148481..1149548 (-) 1068 WP_368505455.1 AI-2E family transporter -
  AB3N04_RS07370 (AB3N04_07370) - 1149657..1149845 (-) 189 WP_047973288.1 DUF3918 family protein -
  AB3N04_RS07375 (AB3N04_07375) - 1149872..1150060 (-) 189 WP_047973289.1 hypothetical protein -
  AB3N04_RS07380 (AB3N04_07380) - 1150074..1150550 (-) 477 WP_368505456.1 PRC-barrel domain-containing protein -
  AB3N04_RS07385 (AB3N04_07385) recD2 1150601..1152925 (-) 2325 WP_368505457.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AB3N04_RS07390 (AB3N04_07390) - 1152935..1153591 (-) 657 WP_047973766.1 lipopolysaccharide assembly protein LapB -
  AB3N04_RS07395 (AB3N04_07395) mnmA 1153670..1154773 (-) 1104 WP_368505458.1 tRNA 2-thiouridine(34) synthase MnmA -
  AB3N04_RS07400 (AB3N04_07400) - 1154795..1155958 (-) 1164 WP_368505459.1 cysteine desulfurase family protein -
  AB3N04_RS07405 (AB3N04_07405) - 1155981..1156400 (-) 420 WP_368505460.1 Rrf2 family transcriptional regulator -
  AB3N04_RS07410 (AB3N04_07410) - 1156345..1157040 (-) 696 WP_368505461.1 YitT family protein -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 86679.42 Da        Isoelectric Point: 5.2767

>NTDB_id=1027070 AB3N04_RS07385 WP_368505457.1 1150601..1152925(-) (recD2) [Alkalihalophilus sp. As8PL]
MMTDEQLTLAEENGIERGYIKGEVLHLVFRNEENAYTVALVRVDETNEELKDKKIAVVGILPQLDVAETFLFFGTVTEHP
RFGKQYQIDQFRRDLPQTKSGIILYLASDRFPGIGKKTAEAIVDTLGERAITRIVEDRAVLKVVPKLSKEKADQLYQQLV
DQQGVEQVLMTLSKHGFGLELSMKVYQAYGFQALDIIQTNPYQLIADVEGIGFRKADLLGAAIGLTGSHPERIRAGLLFV
VQELCLQDGHVFLDKDSLIPHVRSLLSSPGDVITAEEIEHELLSMEEDDALVIEDNRVYVKSLYFAEKGIVSSVRRLAAT
EVKDEFPESEFLKTLGQLEEELKIEYAPQQKEAIQTALSSPFMLLTGGPGTGKTTVIKGIVETYARLNGLSLDPRAYSKS
NPFPILLVAPTGRAAKRMSEATELPAVTIHRLLGWKGGNGGFEKGEHEQLEGELIIVDEVSMVDIWLANQLLKAIPKGMQ
IVFVGDQDQLPSVGPGQVLKDFLDSEVVPTVPLTAIYRQKEGSSIIELAHDMKQGKMPNDLPEAKADRRFFPCTNDHVQH
VVTQICENAMKKGYLARDIQVLAPMYKGQAGITELNRILQELFNPKTEQKRELLYGDLAYRTGDVVLQLVNNPDENVYNG
DRGEIVAIFYAKENTEKQDQVVISFDGTEVVYNKKDLNQITHAYCCSIHKSQGSEFPIVVMPVVRNYSRMLRRNLLYTGI
TRAKKFLLLCGELKSFHTAVTREDELIRHSMLKDKLVALKETQSDFQNGNGRLT

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=1027070 AB3N04_RS07385 WP_368505457.1 1150601..1152925(-) (recD2) [Alkalihalophilus sp. As8PL]
ATGATGACGGATGAACAGCTAACTCTTGCAGAAGAGAATGGAATCGAGCGAGGCTATATTAAAGGTGAGGTATTGCACCT
TGTATTTCGTAATGAAGAAAATGCGTATACAGTTGCCCTAGTACGTGTCGATGAGACAAATGAGGAATTAAAAGATAAAA
AAATAGCTGTAGTAGGGATCCTCCCTCAGCTAGATGTAGCAGAGACCTTTTTATTTTTTGGAACCGTAACAGAGCACCCT
CGATTTGGAAAGCAGTACCAAATTGATCAATTCAGACGTGACCTGCCACAAACAAAAAGTGGGATTATTCTATATTTAGC
AAGTGATCGTTTTCCTGGGATCGGCAAAAAAACAGCTGAAGCCATTGTTGATACATTAGGAGAGCGAGCGATTACACGGA
TCGTAGAGGATCGTGCTGTTTTAAAAGTGGTACCAAAGCTCTCAAAAGAAAAAGCGGATCAATTGTATCAACAGCTTGTT
GACCAACAAGGGGTCGAGCAAGTGTTGATGACGCTCTCTAAGCATGGTTTCGGTCTGGAGCTTTCAATGAAAGTATATCA
AGCGTATGGGTTTCAGGCACTGGATATCATCCAAACAAACCCGTATCAATTAATCGCTGATGTCGAAGGGATCGGCTTTC
GTAAAGCGGATCTACTCGGCGCTGCAATTGGATTAACTGGTAGTCATCCAGAACGAATTCGAGCGGGGCTTTTATTTGTG
GTACAAGAATTGTGTTTACAAGACGGCCATGTGTTTTTGGACAAGGATTCGCTTATTCCCCATGTGAGAAGCCTATTGTC
CTCTCCTGGAGATGTCATTACTGCTGAAGAAATTGAGCATGAGCTTCTTTCAATGGAAGAGGATGACGCACTTGTAATAG
AAGACAATCGCGTCTATGTAAAGTCATTGTATTTTGCTGAAAAAGGAATCGTCTCGAGTGTTCGGCGTCTAGCAGCTACT
GAGGTAAAAGATGAATTTCCTGAATCGGAGTTTCTTAAAACGTTGGGTCAGCTTGAAGAAGAGCTGAAAATTGAATATGC
GCCTCAGCAAAAAGAAGCCATTCAAACAGCTCTTTCTTCTCCGTTTATGCTATTAACAGGAGGACCTGGAACTGGGAAAA
CAACAGTTATTAAAGGGATTGTTGAAACATATGCCAGGTTAAATGGACTATCCCTTGATCCTAGAGCTTATTCAAAGTCT
AATCCTTTTCCGATTCTGTTAGTAGCTCCGACAGGTCGAGCAGCGAAACGAATGAGTGAGGCCACCGAGCTCCCAGCTGT
CACAATTCATCGTTTACTCGGTTGGAAAGGGGGAAATGGAGGCTTTGAAAAAGGAGAGCATGAGCAGCTTGAAGGAGAAT
TGATCATTGTTGATGAGGTATCAATGGTAGATATTTGGCTCGCAAATCAACTATTAAAAGCGATTCCTAAAGGCATGCAG
ATTGTTTTTGTTGGAGACCAAGATCAATTGCCATCGGTAGGTCCTGGCCAAGTATTAAAGGATTTTCTCGATTCAGAGGT
CGTACCAACCGTTCCGTTAACCGCTATCTATCGCCAAAAAGAAGGCTCCTCGATCATCGAGCTTGCCCATGACATGAAAC
AAGGGAAAATGCCAAACGATTTACCTGAAGCAAAGGCTGACCGCCGTTTCTTTCCTTGTACAAATGATCATGTCCAACAT
GTAGTCACTCAAATTTGTGAAAATGCGATGAAAAAAGGCTATTTGGCAAGAGACATTCAAGTTTTAGCCCCGATGTATAA
AGGTCAAGCTGGAATTACCGAGCTTAATCGGATTTTACAGGAGCTATTTAACCCTAAAACTGAGCAAAAAAGGGAGCTTT
TATATGGTGATTTAGCCTATAGAACAGGTGATGTCGTCTTACAGCTTGTCAATAACCCTGATGAGAATGTGTACAACGGC
GACCGTGGGGAAATAGTCGCGATTTTTTATGCAAAAGAAAATACCGAAAAACAAGACCAAGTCGTCATTAGTTTTGATGG
AACCGAGGTCGTTTATAACAAAAAGGATTTAAATCAAATTACTCACGCATATTGTTGCTCCATTCATAAATCACAAGGAA
GTGAATTTCCGATTGTCGTCATGCCAGTCGTTCGGAATTATTCAAGAATGCTTAGACGGAATTTACTTTACACAGGCATC
ACTCGTGCGAAAAAATTTCTGCTCTTATGTGGAGAATTGAAATCCTTTCATACGGCAGTGACAAGAGAAGATGAATTAAT
TAGACACTCAATGTTAAAGGATAAGCTTGTCGCTTTAAAAGAAACGCAATCTGACTTTCAAAATGGAAATGGTCGACTAA
CATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-665)

Helix-hairpin-helix containing domain (HHH_RecD2)

(162-252)

AAA domain (AAA_30)

(346-547)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.878

97.674

0.556

Multiple sequence alignment