Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AW03_RS04295 Genome accession   NZ_CP007173
Coordinates   849112..850926 (+) Length   604 a.a.
NCBI ID   WP_015383126.1    Uniprot ID   -
Organism   Bacillus subtilis HJ5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 844112..855926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW03_RS04280 (AW03_008150) glvR 844929..845693 (+) 765 WP_015482966.1 MurR/RpiR family transcriptional regulator GlvR -
  AW03_RS04285 (AW03_008160) malP 845708..847291 (+) 1584 WP_015383124.1 PTS maltose transporter subunit IIBC -
  AW03_RS04290 (AW03_008170) yfiB 847397..849118 (+) 1722 WP_015383125.1 ABC transporter ATP-binding protein -
  AW03_RS04295 (AW03_008180) rcrQ 849112..850926 (+) 1815 WP_015383126.1 ABC transporter ATP-binding protein Regulator
  AW03_RS04300 (AW03_008190) catD 851080..851484 (+) 405 WP_015252533.1 DoxX family oxidoreductase CatD -
  AW03_RS04305 (AW03_008200) catE 851502..852359 (+) 858 WP_015383127.1 catechol 2,3-dioxygenase -
  AW03_RS04310 (AW03_008210) - 852477..853679 (+) 1203 WP_041517763.1 sensor histidine kinase -
  AW03_RS04315 (AW03_008220) lnrK 853676..854338 (+) 663 WP_015383129.1 two-component system response regulator LnrK -
  AW03_RS04320 (AW03_008230) lnrL 854482..855417 (+) 936 WP_015383130.1 linearmycin resistance ATP-binding protein LnrL -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67365.14 Da        Isoelectric Point: 9.7252

>NTDB_id=102703 AW03_RS04295 WP_015383126.1 849112..850926(+) (rcrQ) [Bacillus subtilis HJ5]
MLKDIRKPFQYPKLPIDKKESAKKRAKAKDTKGTLRRIWSYLAERKGLLILVMLMVVISAIFGLLGPFVIGKAIDHFIVG
KTVSGLIPVLLLLLAIYIIQSLSLWFQNYWMITISQGTVFRMRSELFTHLHELPIPFFDKQRHGELMSRVTNDIENVSST
LNTSVIQILSSVITFVGTIAVMLYMSPLLTLITLTIIPVMAASLKWITNRTGKLFKEQQKNLGDLNGYIEESVSGAKVIK
AYSREKQITAEFLEKNAALKTSGFWAQTISGFIPKVMNSLNNLSFTMIAAIGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEKNAVHQPIQTGSIEFRDVSFGYDKGQQTLKHLQFTVPAGQSIAFVGP
TGAGKTTVTNLLARFYEPNEGKILIDGTDIKTLTRASLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKTAN
AHSFIERLPKGYDTVLTQNGSGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVNIQEALARLMEGRTSVIIAHR
LNTIQRADQIVVLKDGEMIEKGSHDELIRQKGFYSDLSESQFEK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=102703 AW03_RS04295 WP_015383126.1 849112..850926(+) (rcrQ) [Bacillus subtilis HJ5]
ATGCTAAAAGACATCCGCAAGCCTTTCCAATATCCCAAACTGCCAATTGACAAAAAAGAAAGCGCGAAAAAGCGGGCGAA
AGCAAAGGATACAAAGGGCACACTGAGACGAATCTGGTCTTACTTGGCTGAAAGAAAAGGACTGCTCATCCTTGTCATGC
TGATGGTTGTCATCAGCGCCATATTCGGGCTCCTTGGCCCCTTTGTGATCGGAAAGGCCATCGACCATTTTATCGTCGGG
AAAACGGTCAGCGGCTTGATTCCCGTTTTGCTTCTTCTGCTTGCTATCTATATCATTCAGTCCCTGTCGCTTTGGTTTCA
AAACTATTGGATGATTACGATCTCGCAGGGCACGGTTTTCAGAATGAGAAGCGAATTGTTCACCCATCTGCATGAGCTGC
CGATTCCATTTTTTGATAAACAGCGGCACGGCGAGCTGATGAGCCGGGTGACGAATGACATCGAAAATGTCAGTTCTACC
TTAAACACGTCAGTCATTCAAATTTTGTCAAGCGTGATCACCTTTGTCGGGACGATTGCGGTGATGCTGTACATGAGCCC
GCTCCTTACATTGATTACGCTGACCATTATTCCGGTGATGGCAGCGAGCCTGAAATGGATCACCAACCGAACGGGAAAGC
TGTTTAAAGAACAGCAGAAAAACCTTGGTGATCTGAATGGGTATATTGAGGAATCTGTTTCAGGCGCAAAGGTCATCAAA
GCATATTCACGTGAGAAGCAGATTACTGCTGAATTTCTCGAAAAAAACGCTGCACTCAAGACGTCGGGCTTTTGGGCGCA
GACGATTTCCGGGTTTATCCCGAAGGTCATGAACTCTTTGAATAACTTAAGTTTTACAATGATAGCGGCAATCGGCGGTT
TGTTTGCGCTGAAAGGCTGGATCTCGATCGGCTCCATCGTCGTCTTTGCCGAGTATTCAAGGCAATTTACACGCCCTTTA
AACGATCTGGCCAACCAGTTTAATACGATGCTGTCCGCAATCGCCGGCGCTGAACGGGTGTTTGACGTGCTTGATGAAAA
AGAAGAGCGCGAGGATGAAAAGAACGCCGTGCATCAGCCCATCCAAACAGGCAGCATTGAATTCCGGGATGTGTCCTTCG
GTTACGATAAAGGGCAGCAGACACTGAAGCATTTACAGTTTACCGTGCCTGCGGGGCAGTCCATTGCGTTTGTCGGACCG
ACGGGGGCGGGGAAGACAACCGTCACCAACCTGCTCGCCCGTTTTTACGAGCCTAACGAAGGAAAAATTTTAATCGACGG
TACAGATATTAAAACCCTTACTAGAGCGAGCCTGAGAAAAAACATGGGGTTTGTTCTTCAGGATTCTTTCTTATTTCAGG
GAACGATCAGAGAAAACATTCGCTACGGCAGGCTTGATGCTTCTGATCAGGAAGTCGAAGCCGCTGCAAAAACAGCGAAT
GCCCATAGTTTTATTGAAAGGCTGCCAAAAGGGTATGACACCGTGCTGACGCAAAACGGTTCGGGCATCAGTCAAGGACA
GAAGCAGTTGATTTCTATAGCGAGGGCGGTGCTTGCCGATCCGGTTCTTCTCATTTTGGATGAAGCGACAAGCAACATTG
ATACCGTTACAGAAGTCAACATTCAAGAAGCGCTCGCCCGTTTAATGGAAGGAAGAACAAGCGTCATCATTGCCCACAGG
CTGAACACCATTCAAAGAGCGGACCAGATTGTGGTGCTTAAAGACGGTGAAATGATTGAAAAAGGCAGCCATGACGAGCT
GATTCGGCAAAAAGGATTTTACAGTGACTTATCTGAAAGCCAATTTGAGAAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(382-531)

ABC transporter transmembrane region (ABC_membrane)

(49-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.31

96.026

0.377

Multiple sequence alignment