Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | DQL14_RS00585 | Genome accession | NZ_LS483488 |
| Coordinates | 131464..131727 (-) | Length | 87 a.a. |
| NCBI ID | WP_001177716.1 | Uniprot ID | O25204 |
| Organism | Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 126464..136727
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQL14_RS00570 (NCTC11637_00119) | - | 126922..131216 (-) | 4295 | Protein_109 | SNF2-related protein | - |
| DQL14_RS00580 (NCTC11637_00120) | - | 131216..131452 (-) | 237 | WP_001168532.1 | hypothetical protein | - |
| DQL14_RS00585 (NCTC11637_00121) | comB3 | 131464..131727 (-) | 264 | WP_001177716.1 | hypothetical protein | Machinery gene |
| DQL14_RS00590 (NCTC11637_00122) | comB2 | 131739..132023 (-) | 285 | WP_064432016.1 | TrbC/VirB2 family protein | Machinery gene |
| DQL14_RS00595 (NCTC11637_00123) | - | 132020..132499 (-) | 480 | WP_108169480.1 | hypothetical protein | - |
| DQL14_RS00600 (NCTC11637_00124) | - | 132492..132707 (-) | 216 | WP_108169481.1 | hypothetical protein | - |
| DQL14_RS00605 (NCTC11637_00125) | - | 132710..133498 (-) | 789 | WP_172953003.1 | integrase | - |
| DQL14_RS00610 (NCTC11637_00126) | - | 133476..134117 (-) | 642 | WP_108169483.1 | restriction endonuclease subunit S | - |
| DQL14_RS00615 (NCTC11637_00127) | - | 134105..134881 (-) | 777 | WP_108169484.1 | Abi family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9970.83 Da Isoelectric Point: 5.7206
>NTDB_id=1025969 DQL14_RS00585 WP_001177716.1 131464..131727(-) (comB3) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
MQLVGISVSNLKEISSKEKFLWLNAKSFLLSGFVPFIMIPWLDILNSFVLYVCFLLIFSIAEFFDEDISDILIAHSKIKT
KANSFYA
Nucleotide
Download Length: 264 bp
>NTDB_id=1025969 DQL14_RS00585 WP_001177716.1 131464..131727(-) (comB3) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATACTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
ATGCAATTAGTTGGTATTTCAGTTTCTAATCTCAAAGAAATCAGCTCCAAAGAAAAATTTCTTTGGCTCAATGCTAAGAG
TTTTTTACTCTCAGGATTTGTGCCTTTTATTATGATACCTTGGCTAGATATACTGAACTCTTTTGTGCTTTATGTGTGCT
TTCTCTTAATTTTTAGCATAGCGGAGTTCTTTGATGAAGATATAAGTGACATTTTAATCGCTCATTCCAAAATTAAAACC
AAAGCTAATTCATTTTACGCTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
60.92 |
100 |
0.609 |