Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   DQN42_RS04335 Genome accession   NZ_LS483436
Coordinates   877818..879653 (+) Length   611 a.a.
NCBI ID   WP_003078038.1    Uniprot ID   -
Organism   Streptococcus intermedius strain NCTC11324     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 872818..884653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN42_RS04330 (NCTC11324_00874) - 876067..877821 (+) 1755 WP_003078034.1 type IA DNA topoisomerase -
  DQN42_RS04335 (NCTC11324_00875) clpE 877818..879653 (+) 1836 WP_003078038.1 AAA family ATPase Regulator
  DQN42_RS04340 (NCTC11324_00876) - 879749..880096 (+) 348 WP_003078042.1 TrbC/VirB2 family protein -
  DQN42_RS04345 (NCTC11324_00877) - 880110..881177 (+) 1068 WP_014829649.1 hypothetical protein -
  DQN42_RS04350 (NCTC11324_00878) - 881196..881972 (+) 777 WP_003078054.1 hypothetical protein -
  DQN42_RS04355 (NCTC11324_00879) - 881998..884199 (+) 2202 WP_003078007.1 GbpC/Spa domain-containing protein -
  DQN42_RS04360 (NCTC11324_00880) - 884201..884623 (+) 423 WP_003078017.1 single-stranded DNA-binding protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69131.96 Da        Isoelectric Point: 4.9922

>NTDB_id=1024705 DQN42_RS04335 WP_003078038.1 877818..879653(+) (clpE) [Streptococcus intermedius strain NCTC11324]
MNQASKTPFLDQFTENLSQKISQKPKDYQVYGREEEIQAVIISLCRRTKNNPILIGEPGVGKTAILEGLALEILQDRVSE
TLKGLTVRSLELSSLMNESEGSFITELKNIIDELKKTPGQNLLFIDEFHTVVGAGSQNGESLDAGNVLKPSLSRGEIQLI
GATTLDEFHEYIEQDRALERRTQPILIKEPTIAQAIEIVGQAKEIYEDYHNVSISHEAVCQAVKLSTRYIPDRFLPDKAF
DLLDEAATIVSSKGQELVTEREIAEVLKKQTGIPVTTVLKGNKERLDSLEEKLHQRVKGQDEAIKAVVEVIKISQAGMQD
ENKPIGSLLFLGTTGVGKTELSKALAEGLFDDEEALIRFDMSEYSQKGDVTKLIGDRNRRSKGLLTEGVKRKPYSVILLD
EIEKAHPDIYDLLLQVIDDGRLTDATGRLVSFKNTIVIMTTNIGQEKLLTKAAMKGSLRHLTEREQIQFEASMEIELKTE
FRPEFLNRIEYKVIFNLLEREDLEEIVEKNMKEIEERTKKRGLFLSYDPAVLDYLVDLGTDPKNGARPLERLLKRKVQAP
ISDIILKLSNTETYQYMVHIQVEGEKDSENPRKDPRQLHFDIFKHSNDLFN

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=1024705 DQN42_RS04335 WP_003078038.1 877818..879653(+) (clpE) [Streptococcus intermedius strain NCTC11324]
TTGAATCAGGCATCAAAGACTCCTTTTTTAGACCAATTTACAGAGAATTTATCTCAAAAAATTAGTCAAAAGCCAAAGGA
TTATCAAGTGTACGGAAGAGAAGAAGAAATTCAAGCTGTTATTATCTCTCTTTGCAGACGAACGAAGAATAATCCTATCT
TGATTGGTGAACCTGGTGTTGGGAAAACAGCAATTTTAGAAGGATTAGCTTTGGAAATCTTACAAGATCGTGTTTCCGAA
ACATTAAAAGGCTTAACTGTCCGTTCCCTTGAATTGTCTAGTTTAATGAATGAGAGCGAAGGAAGTTTTATCACAGAACT
GAAAAACATCATTGATGAATTAAAGAAAACTCCTGGTCAAAATCTACTCTTTATTGATGAATTTCATACAGTGGTCGGTG
CTGGGAGTCAGAATGGAGAATCACTAGATGCAGGAAATGTTTTGAAACCTTCTTTGTCTCGTGGAGAGATTCAGTTGATT
GGTGCTACTACATTAGATGAATTTCATGAGTATATTGAACAAGATCGTGCTTTGGAACGCAGAACCCAACCAATTCTCAT
TAAAGAGCCAACAATTGCACAAGCGATTGAAATTGTGGGACAAGCAAAAGAAATTTATGAAGACTATCATAATGTTTCAA
TCAGTCATGAAGCTGTTTGTCAAGCCGTGAAACTATCTACCCGTTATATTCCTGATCGCTTTCTTCCTGATAAAGCTTTT
GATTTGCTAGATGAGGCTGCTACTATAGTTTCTTCAAAGGGACAAGAACTTGTTACAGAACGGGAAATAGCAGAAGTGCT
GAAGAAGCAAACTGGTATTCCAGTAACTACTGTTTTAAAGGGAAACAAAGAACGCTTAGATTCTTTAGAAGAAAAGCTTC
ATCAGCGAGTAAAAGGACAAGATGAAGCTATCAAAGCTGTTGTAGAAGTGATTAAAATTAGTCAAGCTGGAATGCAAGAT
GAAAACAAGCCAATTGGATCTCTTCTTTTCTTAGGAACAACTGGAGTTGGGAAAACCGAATTGTCAAAAGCTCTTGCTGA
AGGATTATTTGATGATGAAGAAGCGTTGATTCGATTTGATATGTCAGAATACTCTCAAAAAGGTGATGTCACTAAATTGA
TTGGAGATAGAAATCGTAGAAGTAAGGGACTTTTAACAGAAGGAGTCAAAAGAAAACCTTATTCCGTTATTTTGCTTGAT
GAAATTGAAAAAGCTCATCCAGACATCTATGATCTTCTTCTTCAGGTGATTGATGATGGTCGATTAACGGATGCGACCGG
AAGATTAGTCAGTTTCAAAAATACTATTGTGATTATGACAACGAATATTGGTCAAGAAAAGCTTTTGACAAAAGCGGCTA
TGAAAGGCAGTCTTCGTCATTTAACAGAACGGGAACAAATTCAATTTGAAGCTAGCATGGAAATTGAACTCAAAACAGAA
TTTCGTCCTGAATTTTTAAATCGAATTGAATACAAAGTGATTTTCAATTTACTTGAAAGAGAAGATTTAGAAGAAATAGT
GGAGAAAAATATGAAAGAAATCGAGGAACGGACGAAGAAAAGGGGACTGTTCTTATCTTATGACCCAGCTGTTCTGGATT
ATTTAGTGGATCTTGGAACAGATCCTAAAAATGGTGCTCGTCCACTTGAACGATTATTGAAAAGAAAAGTTCAAGCTCCT
ATTTCAGATATTATTTTAAAACTTTCAAATACTGAAACTTACCAATACATGGTTCATATTCAAGTAGAGGGAGAAAAAGA
TTCCGAAAATCCCCGAAAAGACCCTCGTCAATTGCATTTTGATATTTTTAAACATTCGAATGACTTATTCAACTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(53-167)

AAA domain (Cdc48 subfamily) (AAA_2)

(323-490)

AAA lid domain (AAA_lid_9)

(192-260)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(498-567)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae Rx1

39.441

100

0.416
  clpE Streptococcus pneumoniae TIGR4

39.441

100

0.416
  clpE Streptococcus pneumoniae R6

39.441

100

0.416
  clpE Streptococcus pneumoniae D39

39.441

100

0.416
  clpE Streptococcus mutans UA159

40.415

100

0.414
  clpC Streptococcus thermophilus LMD-9

41.653

99.018

0.412
  clpC Streptococcus thermophilus LMG 18311

41.488

99.018

0.411
  clpC Lactococcus lactis subsp. cremoris KW2

39.713

100

0.408
  clpC Streptococcus mutans UA159

40.291

100

0.408
  clpC Streptococcus pneumoniae Rx1

40.864

98.527

0.403
  clpC Streptococcus pneumoniae D39

40.864

98.527

0.403
  clpC Streptococcus pneumoniae TIGR4

40.864

98.527

0.403
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

38.24

100

0.391