Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQN52_RS08800 Genome accession   NZ_LS483426
Coordinates   1640448..1641071 (+) Length   207 a.a.
NCBI ID   WP_003786438.1    Uniprot ID   F5S6N3
Organism   Kingella kingae strain NCTC10529     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1635448..1646071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN52_RS08770 (NCTC10529_01705) - 1636536..1637333 (-) 798 WP_003786450.1 polyamine aminopropyltransferase -
  DQN52_RS08775 (NCTC10529_01706) - 1637472..1638254 (-) 783 WP_003786448.1 NUDIX domain-containing protein -
  DQN52_RS08780 (NCTC10529_01707) - 1638340..1639236 (+) 897 WP_003786446.1 recombination-associated protein RdgC -
  DQN52_RS08785 (NCTC10529_01708) - 1639323..1639715 (+) 393 WP_003786444.1 hypothetical protein -
  DQN52_RS08790 (NCTC10529_01709) dcd 1639725..1640291 (+) 567 WP_003786442.1 dCTP deaminase -
  DQN52_RS08800 (NCTC10529_01710) recR 1640448..1641071 (+) 624 WP_003786438.1 recombination mediator RecR Machinery gene
  DQN52_RS08805 (NCTC10529_01711) - 1641068..1641709 (+) 642 WP_003786437.1 hypothetical protein -
  DQN52_RS08810 - 1641781..1642098 (+) 318 WP_003786436.1 hypothetical protein -
  DQN52_RS08815 (NCTC10529_01712) - 1642254..1642703 (+) 450 WP_003790679.1 GatB/YqeY domain-containing protein -
  DQN52_RS08820 (NCTC10529_01713) cmk 1642714..1643370 (+) 657 WP_003786432.1 (d)CMP kinase -
  DQN52_RS08825 (NCTC10529_01714) rpsA 1643426..1645171 (+) 1746 WP_080561228.1 30S ribosomal protein S1 -
  DQN52_RS08830 (NCTC10529_01715) - 1645188..1645493 (+) 306 WP_003786429.1 integration host factor subunit beta -
  DQN52_RS08835 (NCTC10529_01716) acpS 1645578..1645955 (-) 378 WP_003786427.1 holo-ACP synthase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22856.14 Da        Isoelectric Point: 5.2093

>NTDB_id=1024398 DQN52_RS08800 WP_003786438.1 1640448..1641071(+) (recR) [Kingella kingae strain NCTC10529]
MSDPNQIDAYSNLIHALRVLPNVGVKTAQRMAFALLQQNRDGAAQLLSALDLALKQIHNCQLCNTFCQDDLCHTCTDPRR
DSRRLMIVHMPADVSAMELARCHDGLYFVLMGQVSPTQDMDLSHIALDKLVARIAQHPVDEIIIATAFTAEGDATAYVLS
ELFANQPYKISRLARGMPLGSELEYVDAGTLAQAVYERQLLQNGESS

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1024398 DQN52_RS08800 WP_003786438.1 1640448..1641071(+) (recR) [Kingella kingae strain NCTC10529]
ATGTCCGACCCCAATCAAATTGACGCTTATTCCAACCTAATCCATGCGCTGCGCGTGTTGCCCAATGTGGGCGTGAAAAC
CGCACAGCGCATGGCATTTGCCTTGCTGCAACAAAACCGAGATGGTGCAGCACAACTCTTGTCTGCGCTGGATTTGGCGT
TAAAGCAAATCCACAACTGCCAGCTATGCAACACGTTTTGCCAAGACGATTTGTGCCACACTTGCACCGACCCGCGCCGA
GATTCGCGCCGTTTGATGATTGTGCATATGCCTGCCGATGTGTCGGCAATGGAATTGGCACGTTGTCATGACGGCTTGTA
TTTTGTGTTGATGGGACAAGTCAGCCCCACGCAAGACATGGATTTGAGCCACATTGCGCTAGACAAATTGGTCGCGCGAA
TCGCCCAACATCCTGTGGACGAAATCATCATCGCCACCGCATTCACAGCCGAGGGCGATGCCACGGCGTATGTTTTGTCG
GAATTGTTTGCTAATCAACCATATAAAATCAGTCGTTTAGCGCGTGGTATGCCACTGGGCAGCGAGCTGGAATATGTGGA
CGCTGGCACGTTGGCGCAGGCGGTATATGAACGCCAGTTGCTGCAAAACGGAGAGTCGTCATGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(43-81)

Toprim domain (Toprim_4)

(84-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5S6N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.583

92.754

0.367