Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   DQN36_RS08185 Genome accession   NZ_LS483425
Coordinates   1632806..1634074 (+) Length   422 a.a.
NCBI ID   WP_002982538.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13737     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1627806..1639074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN36_RS08160 (NCTC13737_01608) - 1627974..1628723 (-) 750 WP_111704372.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  DQN36_RS08165 (NCTC13737_01609) prmA 1628723..1629676 (-) 954 WP_111704373.1 50S ribosomal protein L11 methyltransferase -
  DQN36_RS08170 (NCTC13737_01610) - 1629747..1630217 (-) 471 WP_002982553.1 DUF3013 family protein -
  DQN36_RS08175 (NCTC13737_01611) pabB 1630417..1632174 (+) 1758 WP_111704374.1 aminodeoxychorismate synthase component I -
  DQN36_RS08180 (NCTC13737_01612) - 1632207..1632773 (+) 567 WP_111704375.1 aminodeoxychorismate/anthranilate synthase component II -
  DQN36_RS08185 (NCTC13737_01613) rarA 1632806..1634074 (+) 1269 WP_002982538.1 replication-associated recombination protein A Machinery gene
  DQN36_RS08200 (NCTC13737_01616) smeZ 1634646..1635347 (+) 702 WP_111704376.1 streptococcal mitogenic exotoxin SmeZ -
  DQN36_RS09265 (NCTC13737_01617) - 1635764..1635898 (-) 135 WP_261729337.1 hypothetical protein -
  DQN36_RS08205 (NCTC13737_01618) - 1636077..1637705 (+) 1629 WP_111704377.1 ABC transporter substrate-binding protein -
  DQN36_RS08210 (NCTC13737_01619) - 1637818..1638795 (+) 978 WP_111704378.1 ABC transporter permease -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46645.07 Da        Isoelectric Point: 6.3774

>NTDB_id=1024339 DQN36_RS08185 WP_002982538.1 1632806..1634074(+) (rarA) [Streptococcus pyogenes strain NCTC13737]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDSSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1024339 DQN36_RS08185 WP_002982538.1 1632806..1634074(+) (rarA) [Streptococcus pyogenes strain NCTC13737]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGTATCGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGTACTTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGCGCAACCACTGAGAACCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAAATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATAGTAGTC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCTCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCCAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.712

98.815

0.59