Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   DQN31_RS08070 Genome accession   NZ_LS483421
Coordinates   1593751..1595019 (+) Length   422 a.a.
NCBI ID   WP_011285735.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10877     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1588751..1600019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN31_RS08045 (NCTC10877_01588) - 1588919..1589668 (-) 750 WP_014407873.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  DQN31_RS08050 (NCTC10877_01589) prmA 1589668..1590621 (-) 954 WP_014407874.1 50S ribosomal protein L11 methyltransferase -
  DQN31_RS08055 (NCTC10877_01590) - 1590692..1591162 (-) 471 WP_003056995.1 DUF3013 family protein -
  DQN31_RS08060 (NCTC10877_01591) pabB 1591362..1593119 (+) 1758 WP_014407875.1 aminodeoxychorismate synthase component I -
  DQN31_RS08065 (NCTC10877_01592) - 1593152..1593718 (+) 567 WP_014407876.1 aminodeoxychorismate/anthranilate synthase component II -
  DQN31_RS08070 (NCTC10877_01593) rarA 1593751..1595019 (+) 1269 WP_011285735.1 replication-associated recombination protein A Machinery gene
  DQN31_RS08085 (NCTC10877_01596) - 1595519..1595959 (+) 441 WP_011889182.1 GNAT family N-acetyltransferase -
  DQN31_RS08090 (NCTC10877_01597) - 1596014..1596520 (+) 507 WP_014411900.1 DNA topology modulation protein -
  DQN31_RS08095 (NCTC10877_01598) smeZ 1596769..1597470 (+) 702 WP_041174350.1 streptococcal mitogenic exotoxin SmeZ -
  DQN31_RS09240 (NCTC10877_01599) - 1597886..1598020 (-) 135 WP_011018269.1 hypothetical protein -
  DQN31_RS08100 (NCTC10877_01600) - 1598199..1599827 (+) 1629 WP_014407880.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46615.04 Da        Isoelectric Point: 6.3774

>NTDB_id=1024247 DQN31_RS08070 WP_011285735.1 1593751..1595019(+) (rarA) [Streptococcus pyogenes strain NCTC10877]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1024247 DQN31_RS08070 WP_011285735.1 1593751..1595019(+) (rarA) [Streptococcus pyogenes strain NCTC10877]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAACGGCACCATTATCATGATTGGCGCAACCACTGAGAACCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGAGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCTCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCCAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.952

98.815

0.592

Multiple sequence alignment