Detailed information NTG1024241

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: AB3L01_RS10785
• Genome accession: NZ_CP162145
• Coordinates: 2208948..2209649 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain SIMBA089
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2203948..2214649

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB3L01_RS10755 (AB3L01_10755)	-	2204255..2204698 (-)	444	WP_001246675.1	SRPBCC family protein	-
AB3L01_RS10760 (AB3L01_10760)	tadA	2204768..2205271 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
AB3L01_RS10765 (AB3L01_10765)	-	2205278..2206402 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
AB3L01_RS10770 (AB3L01_10770)	ung	2206399..2207112 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
AB3L01_RS10775 (AB3L01_10775)	-	2207163..2207759 (-)	597	WP_000908449.1	6-carboxytetrahydropterin synthase	-
AB3L01_RS10780 (AB3L01_10780)	gspK	2207989..2208948 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
AB3L01_RS10785 (AB3L01_10785)	xcpW	2208948..2209649 (-)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
AB3L01_RS10790 (AB3L01_10790)	xcpV	2209649..2210029 (-)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
AB3L01_RS10795 (AB3L01_10795)	-	2210019..2210573 (-)	555	WP_000841373.1	type II secretion system protein	-
AB3L01_RS10800 (AB3L01_10800)	-	2210583..2211191 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
AB3L01_RS10805 (AB3L01_10805)	-	2211229..2212002 (-)	774	WP_000497300.1	TatD family hydrolase	-
AB3L01_RS10810 (AB3L01_10810)	-	2212020..2212361 (-)	342	WP_001183027.1	PilZ domain-containing protein	-
AB3L01_RS10815 (AB3L01_10815)	-	2212373..2213353 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
AB3L01_RS10820 (AB3L01_10820)	kdsB	2213365..2214126 (-)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=1024241 AB3L01_RS10785 WP_000594579.1 2208948..2209649(-) (xcpW) [Acinetobacter baumannii strain SIMBA089]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=1024241 AB3L01_RS10785 WP_000594579.1 2208948..2209649(-) (xcpW) [Acinetobacter baumannii strain SIMBA089]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983