Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   DQN75_RS08040 Genome accession   NZ_LS483420
Coordinates   1585886..1587154 (+) Length   422 a.a.
NCBI ID   WP_011285735.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC13739     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1580886..1592154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN75_RS08015 (NCTC13739_01586) - 1581053..1581802 (-) 750 WP_111685226.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  DQN75_RS08020 (NCTC13739_01587) prmA 1581802..1582755 (-) 954 WP_111685228.1 50S ribosomal protein L11 methyltransferase -
  DQN75_RS08025 (NCTC13739_01588) - 1582826..1583296 (-) 471 WP_003056995.1 DUF3013 family protein -
  DQN75_RS08030 (NCTC13739_01589) pabB 1583497..1585254 (+) 1758 WP_111685230.1 aminodeoxychorismate synthase component I -
  DQN75_RS08035 (NCTC13739_01590) - 1585287..1585853 (+) 567 WP_111685232.1 aminodeoxychorismate/anthranilate synthase component II -
  DQN75_RS08040 (NCTC13739_01591) rarA 1585886..1587154 (+) 1269 WP_011285735.1 replication-associated recombination protein A Machinery gene
  DQN75_RS08055 (NCTC13739_01594) - 1587653..1588093 (+) 441 WP_111685233.1 GNAT family N-acetyltransferase -
  DQN75_RS08060 (NCTC13739_01595) - 1588148..1588654 (+) 507 WP_023079287.1 DNA topology modulation protein -
  DQN75_RS08065 (NCTC13739_01596) - 1588903..1589604 (+) 702 WP_111685235.1 exotoxin beta-grasp domain-containing protein -
  DQN75_RS08070 (NCTC13739_01597) - 1589930..1590154 (-) 225 WP_063632533.1 hypothetical protein -
  DQN75_RS08075 (NCTC13739_01598) - 1590333..1591961 (+) 1629 WP_010922707.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46615.04 Da        Isoelectric Point: 6.3774

>NTDB_id=1024154 DQN75_RS08040 WP_011285735.1 1585886..1587154(+) (rarA) [Streptococcus pyogenes strain NCTC13739]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1024154 DQN75_RS08040 WP_011285735.1 1585886..1587154(+) (rarA) [Streptococcus pyogenes strain NCTC13739]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAACAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCACCATTATCATGATTGGCGCAACCACTGAGAACCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
TTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCCCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCAAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.952

98.815

0.592

Multiple sequence alignment