Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   DQM62_RS09540 Genome accession   NZ_LS483418
Coordinates   1906193..1907479 (+) Length   428 a.a.
NCBI ID   WP_014917332.1    Uniprot ID   -
Organism   Streptococcus suis strain NCTC10234     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1901193..1912479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM62_RS10150 (NCTC10234_01869) - 1902538..1902660 (-) 123 WP_012027982.1 membrane protein -
  DQM62_RS09515 (NCTC10234_01870) - 1902664..1903410 (-) 747 WP_012775393.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  DQM62_RS09520 (NCTC10234_01871) prmA 1903412..1904365 (-) 954 WP_012775394.1 50S ribosomal protein L11 methyltransferase -
  DQM62_RS09525 (NCTC10234_01872) - 1904961..1905314 (-) 354 WP_012027987.1 ASCH domain-containing protein -
  DQM62_RS09530 (NCTC10234_01873) - 1905316..1905786 (-) 471 WP_012027988.1 DUF3013 family protein -
  DQM62_RS09535 (NCTC10234_01874) - 1905788..1906123 (-) 336 WP_012027989.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  DQM62_RS09540 (NCTC10234_01875) rarA 1906193..1907479 (+) 1287 WP_014917332.1 replication-associated recombination protein A Machinery gene
  DQM62_RS09555 (NCTC10234_01878) nrdG 1907961..1908518 (-) 558 WP_012027991.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  DQM62_RS09565 (NCTC10234_01879) - 1908705..1909199 (-) 495 WP_012775395.1 GNAT family N-acetyltransferase -
  DQM62_RS09570 (NCTC10234_01880) - 1909201..1910547 (-) 1347 WP_012027993.1 bifunctional metallophosphatase/5'-nucleotidase -
  DQM62_RS10155 (NCTC10234_01881) - 1910549..1910683 (-) 135 WP_002939130.1 hypothetical protein -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 47365.06 Da        Isoelectric Point: 6.6429

>NTDB_id=1024071 DQM62_RS09540 WP_014917332.1 1906193..1907479(+) (rarA) [Streptococcus suis strain NCTC10234]
MPANLALRMRPKSIDEVIGQEHLVGPGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLLLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLQTSHIRQALE
LALTDSERGFDFPITIEPEALDFLANATNGDLRAAYNSLELAVLSTKECDDGSRHIDLDAVENSLQKSYISMDKNGDAHY
DILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALKAAQKIGFPEARILIANVV
VDLALSPKSNSAYLAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLHADYFTA
NDTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=1024071 DQM62_RS09540 WP_014917332.1 1906193..1907479(+) (rarA) [Streptococcus suis strain NCTC10234]
ATGCCAGCCAATCTCGCCCTTCGTATGCGACCCAAATCCATTGATGAGGTAATCGGTCAGGAACACCTGGTCGGTCCTGG
AAAGATTATCCGTCGCATGATCGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCAGGGATTGGCAAGACCT
CTATCGCCTCTGCCATTGCTGGCACAACCAAGTATGCCTTTCGGACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAGGCTAAGTTTTCTGGCGGTCTGGTTCTCCTGCTCGATGAAATCCACCGCCTTAACAAGACCAA
GCAGGATTTCCTGCTCCCTCTTTTGGAAAATGGCAATATCATCATGATTGGAGCAACGACGGAAAATCCATTTTTCTCTA
TTTTACCCGCCATTCGCAGTCGAGTGCAGATTTTTGAATTACAACCTTTGCAAACCAGCCATATCCGACAGGCCTTGGAG
TTGGCTTTGACAGACAGCGAACGTGGTTTTGACTTCCCTATTACCATTGAGCCTGAGGCTCTGGATTTTCTGGCAAATGC
GACCAACGGTGACCTTCGTGCCGCCTACAATTCGCTAGAACTAGCTGTACTTTCGACCAAGGAATGTGACGACGGTAGCC
GCCACATTGATCTGGACGCCGTGGAAAATAGCCTGCAAAAGTCCTACATCAGCATGGACAAGAACGGCGATGCCCACTAC
GACATCCTCTCCGCCCTGCAAAAATCCATTCGGGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCTCGTTTGATTGA
GGCCGAAGATCTGCCTAGTCTGGCTCGTCGCTTGACGGTCATTGCCTACGAAGACATCGGCTTGGCCAATCCAGAGGCTC
AGATTCATACGGTGACGGCCCTTAAAGCCGCCCAGAAAATTGGCTTTCCAGAAGCACGGATTTTGATTGCCAATGTGGTA
GTCGATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCTGGCTATGGATGCAGCTCTGGCTGATTTGCGAAAGAACGG
TCATCTGCCCATTCCAAATCACCTGCGAGACGGTCATTATGCTGGTAGTAAGGAGCTGGGAAATGCCATTGGTTACCAGT
ATCCCCATGCCTATCCTGAGAAATGGGTGGACCAACAATACCTGCCTGATAAGTTACTTCATGCGGACTACTTCACTGCC
AATGACACCGGCAAATATGAGCGTGCCTTGGGCATGACACAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAA
TCCTTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-251)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.091

97.664

0.577