Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AB2S62_RS00555 Genome accession   NZ_CP162100
Coordinates   117808..118509 (+) Length   233 a.a.
NCBI ID   WP_367987801.1    Uniprot ID   -
Organism   Vibrio sp. NTOU-M3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 107673..139835 117808..118509 within 0


Gene organization within MGE regions


Location: 107673..139835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2S62_RS00525 (AB2S62_00285) - 107673..111824 (-) 4152 WP_367987796.1 VPA1269 family protein -
  AB2S62_RS00530 (AB2S62_00290) gmtY 111824..113119 (-) 1296 WP_367987797.1 gamma-mobile-trio recombinase GmtY -
  AB2S62_RS00535 (AB2S62_00295) greB 113464..113802 (+) 339 Protein_94 transcription elongation factor GreB -
  AB2S62_RS00540 (AB2S62_00300) - 113919..116228 (+) 2310 WP_367987798.1 Tex family protein -
  AB2S62_RS00545 (AB2S62_00305) - 116311..116781 (-) 471 WP_367987799.1 ATP-dependent Lon protease -
  AB2S62_RS00550 (AB2S62_00310) bioH 116954..117751 (-) 798 WP_367987800.1 pimeloyl-ACP methyl ester esterase BioH -
  AB2S62_RS00555 (AB2S62_00315) comF 117808..118509 (+) 702 WP_367987801.1 phosphoribosyltransferase family protein Machinery gene
  AB2S62_RS00560 (AB2S62_00320) nfuA 118589..119176 (+) 588 WP_367987802.1 Fe-S biogenesis protein NfuA -
  AB2S62_RS00565 (AB2S62_00325) nudE 119330..119875 (+) 546 WP_367987803.1 ADP compounds hydrolase NudE -
  AB2S62_RS00570 (AB2S62_00330) cysQ 119900..120727 (+) 828 WP_367987804.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AB2S62_RS00575 (AB2S62_00335) recG 120746..122824 (-) 2079 WP_367987805.1 ATP-dependent DNA helicase RecG -
  AB2S62_RS00580 (AB2S62_00340) trmH 122962..123645 (-) 684 WP_367987806.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  AB2S62_RS00585 (AB2S62_00345) spoT 123709..125829 (-) 2121 WP_367987807.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  AB2S62_RS00590 (AB2S62_00350) rpoZ 125860..126135 (-) 276 WP_367987808.1 DNA-directed RNA polymerase subunit omega -
  AB2S62_RS00595 (AB2S62_00355) gmk 126241..126864 (-) 624 WP_367987809.1 guanylate kinase -
  AB2S62_RS00600 (AB2S62_00360) - 127224..127580 (+) 357 WP_367987810.1 hypothetical protein -
  AB2S62_RS00605 (AB2S62_00365) - 127781..128719 (+) 939 WP_367987811.1 DMT family transporter -
  AB2S62_RS00610 (AB2S62_00370) - 128797..129273 (-) 477 WP_367987812.1 hypothetical protein -
  AB2S62_RS00615 (AB2S62_00375) - 129463..130881 (-) 1419 WP_367987813.1 transcriptional regulator -
  AB2S62_RS00620 (AB2S62_00380) - 131428..132315 (-) 888 WP_367987814.1 hypothetical protein -
  AB2S62_RS00625 (AB2S62_00385) - 132723..133367 (+) 645 WP_367987815.1 inovirus Gp2 family protein -
  AB2S62_RS00630 (AB2S62_00390) - 133428..134111 (+) 684 WP_367987816.1 inovirus-type Gp2 protein -
  AB2S62_RS00635 (AB2S62_00395) - 134165..134764 (+) 600 WP_367987817.1 inovirus Gp2 family protein -
  AB2S62_RS00640 (AB2S62_00400) - 134831..135031 (+) 201 WP_367987818.1 AlpA family transcriptional regulator -
  AB2S62_RS00645 (AB2S62_00405) - 135112..135552 (+) 441 WP_367987819.1 ribonuclease HI -
  AB2S62_RS00650 (AB2S62_00410) - 135762..138263 (+) 2502 WP_367987820.1 S-type pyocin domain-containing protein -
  AB2S62_RS00655 (AB2S62_00415) - 138266..138520 (+) 255 WP_367987821.1 bacteriocin immunity protein -
  AB2S62_RS00660 (AB2S62_00420) - 138631..138801 (+) 171 Protein_119 RNase H family protein -
  AB2S62_RS00665 (AB2S62_00425) - 138985..139790 (+) 806 Protein_120 integrase core domain-containing protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26741.01 Da        Isoelectric Point: 8.4195

>NTDB_id=1024021 AB2S62_RS00555 WP_367987801.1 117808..118509(+) (comF) [Vibrio sp. NTOU-M3]
MLTDWLRKNIVSHWVRSCDLCHLPAEDSQQAFCLHCSQYIAPIPRCDRCGLPMPESVEACGTCLAEPPPWQRLYCVSDYR
PPLSGYIHRLKYQKHFHQAKPLAQWLAGRIEQPAPLITSVPLHWKRQWWRGYNQSELLAKSLAAELALNYRVLFRRIEET
KPQQGMDKADRVRNLRHAFVLNGSPLAKHIAIVDDVVTTGSTVYQLSRLLLEAGVERVDIYCICRTLAPSDLV

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1024021 AB2S62_RS00555 WP_367987801.1 117808..118509(+) (comF) [Vibrio sp. NTOU-M3]
ATGTTAACGGATTGGTTACGGAAAAACATCGTTTCACACTGGGTGAGAAGCTGTGATTTATGCCACCTCCCCGCGGAAGA
CAGTCAGCAAGCCTTTTGCTTACATTGCTCGCAATATATTGCGCCAATTCCGCGTTGTGACCGATGTGGCTTGCCGATGC
CAGAATCGGTTGAGGCATGCGGGACATGTCTGGCGGAGCCTCCTCCTTGGCAGAGGCTTTATTGCGTATCTGATTATCGT
CCACCGCTTTCTGGCTACATTCATAGACTGAAGTATCAAAAGCACTTTCACCAAGCAAAGCCACTCGCACAGTGGTTAGC
TGGCCGAATTGAACAACCCGCGCCATTAATTACCAGCGTGCCACTGCATTGGAAGCGACAGTGGTGGCGTGGTTACAATC
AGAGTGAGCTGTTGGCAAAATCTCTGGCGGCAGAGTTAGCATTGAACTACCGAGTGCTGTTTCGTCGCATTGAGGAAACC
AAGCCACAGCAAGGGATGGACAAAGCCGATCGCGTGCGAAATCTGCGTCATGCCTTTGTGTTAAATGGTTCTCCGTTAGC
CAAACATATTGCGATTGTTGATGATGTGGTCACCACAGGCAGTACGGTGTATCAATTATCTCGATTACTGCTTGAAGCGG
GCGTTGAAAGGGTTGATATTTACTGTATCTGCCGCACTCTTGCTCCATCGGATCTCGTTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(137-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

53.846

100

0.541
  comF Vibrio campbellii strain DS40M4

49.362

100

0.498

Multiple sequence alignment