Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB3G27_RS07860 Genome accession   NZ_CP162095
Coordinates   1582384..1583163 (+) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus pumilus strain LBUM494     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1577384..1588163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3G27_RS07840 (AB3G27_07840) trmFO 1578088..1579392 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB3G27_RS07845 (AB3G27_07845) xerC 1579455..1580372 (+) 918 WP_003211704.1 tyrosine recombinase XerC -
  AB3G27_RS07850 (AB3G27_07850) hslV 1580387..1580932 (+) 546 WP_368198414.1 ATP-dependent protease subunit HslV -
  AB3G27_RS07855 (AB3G27_07855) hslU 1580949..1582349 (+) 1401 WP_003211907.1 HslU--HslV peptidase ATPase subunit -
  AB3G27_RS07860 (AB3G27_07860) codY 1582384..1583163 (+) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB3G27_RS07865 (AB3G27_07865) flgB 1583450..1583839 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  AB3G27_RS07870 (AB3G27_07870) flgC 1583839..1584291 (+) 453 WP_106041891.1 flagellar basal body rod protein FlgC -
  AB3G27_RS07875 (AB3G27_07875) fliE 1584303..1584620 (+) 318 WP_003212183.1 flagellar hook-basal body complex protein FliE -
  AB3G27_RS07880 (AB3G27_07880) fliF 1584670..1586262 (+) 1593 WP_034619909.1 flagellar basal-body MS-ring/collar protein FliF -
  AB3G27_RS07885 (AB3G27_07885) fliG 1586274..1587290 (+) 1017 WP_003210883.1 flagellar motor switch protein FliG -
  AB3G27_RS07890 (AB3G27_07890) fliH 1587283..1588047 (+) 765 WP_003212485.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=1023985 AB3G27_RS07860 WP_003210838.1 1582384..1583163(+) (codY) [Bacillus pumilus strain LBUM494]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1023985 AB3G27_RS07860 WP_003210838.1 1582384..1583163(+) (codY) [Bacillus pumilus strain LBUM494]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTT
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGGACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAATCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGTAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment