Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DQN54_RS11830 Genome accession   NZ_LS483417
Coordinates   1405344..1406066 (-) Length   240 a.a.
NCBI ID   WP_001010371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC11902     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1400344..1411066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN54_RS07450 (NCTC11902_01430) - 1402918..1404084 (-) 1167 WP_000521369.1 MalY/PatB family protein -
  DQN54_RS07455 (NCTC11902_01431) - 1404092..1405186 (-) 1095 WP_000031974.1 cystathionine gamma-synthase -
  DQN54_RS11830 (NCTC11902_01432) rcrP 1405344..1406066 (-) 723 WP_001010371.1 ABC transporter ATP-binding protein Regulator
  DQN54_RS11835 (NCTC11902_01433) - 1406091..1407026 (-) 936 WP_000768994.1 ABC transporter ATP-binding protein -
  DQN54_RS07465 (NCTC11902_01434) amiA 1407198..1409156 (-) 1959 WP_000748873.1 peptide ABC transporter substrate-binding protein Regulator
  DQN54_RS07470 (NCTC11902_01435) - 1409359..1410981 (-) 1623 WP_000017793.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27132.92 Da        Isoelectric Point: 4.9157

>NTDB_id=1023980 DQN54_RS11830 WP_001010371.1 1405344..1406066(-) (rcrP) [Streptococcus pneumoniae strain NCTC11902]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRFLSGGQSQRLQIARTYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHSLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1023980 DQN54_RS11830 WP_001010371.1 1405344..1406066(-) (rcrP) [Streptococcus pneumoniae strain NCTC11902]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGATTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAACCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCTACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATAGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.402

99.583

0.363