Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   DQN54_RS08670 Genome accession   NZ_LS483417
Coordinates   1634552..1635823 (+) Length   423 a.a.
NCBI ID   WP_001113209.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC11902     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1629552..1640823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN54_RS08625 (NCTC11902_01656) - 1630617..1631045 (-) 429 WP_000418166.1 NUDIX hydrolase -
  DQN54_RS08630 (NCTC11902_01657) - 1631026..1632114 (-) 1089 WP_000719716.1 M50 family metallopeptidase -
  DQN54_RS08635 (NCTC11902_01658) - 1632133..1632603 (-) 471 WP_000257097.1 DUF3013 family protein -
  DQN54_RS08640 (NCTC11902_01659) - 1632894..1633346 (-) 453 WP_000961810.1 type II toxin-antitoxin system HicB family antitoxin -
  DQN54_RS08645 - 1633383..1633562 (-) 180 WP_001132281.1 type II toxin-antitoxin system HicA family toxin -
  DQN54_RS08650 - 1633699..1633878 (-) 180 WP_001809903.1 hypothetical protein -
  DQN54_RS08660 (NCTC11902_01660) - 1634043..1634282 (-) 240 WP_000818079.1 hypothetical protein -
  DQN54_RS08670 (NCTC11902_01661) rarA 1634552..1635823 (+) 1272 WP_001113209.1 replication-associated recombination protein A Machinery gene
  DQN54_RS08680 (NCTC11902_01664) - 1636370..1637689 (-) 1320 WP_000502555.1 glycoside hydrolase family 32 protein -
  DQN54_RS08685 (NCTC11902_01665) - 1637699..1639315 (-) 1617 WP_000669739.1 ABC transporter substrate-binding protein -
  DQN54_RS08690 (NCTC11902_01666) - 1639344..1640234 (-) 891 WP_000797961.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 47011.47 Da        Isoelectric Point: 5.9471

>NTDB_id=1023935 DQN54_RS08670 WP_001113209.1 1634552..1635823(+) (rarA) [Streptococcus pneumoniae strain NCTC11902]
MPDNLALRMRPKTIDQVIGQEHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEISEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNQDVKEALQ
IALSNPERGFDFPIELDEDALDFIATSTNGDLRSAFNSLDLAVLSTPENDEGIRHITLDIMENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVDASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPEAQIHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYVAMDKALADLKTSGHLPIPRHLRDGHYSGSKELGNAQDYLYPHNYPGNWIKQDYLPEKIRNHHYFQA
EDTGKYERALAQRKEAIDRLRKI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=1023935 DQN54_RS08670 WP_001113209.1 1634552..1635823(+) (rarA) [Streptococcus pneumoniae strain NCTC11902]
ATGCCAGACAATCTCGCGCTTCGCATGCGCCCTAAAACCATCGACCAGGTCATCGGTCAGGAGCATCTGGTCGGACCTGG
AAAAATCATCCGCCGCATGGTGGAAGCCAACCGCCTGTCCTCCATGATTCTATACGGCCCTCCGGGAATCGGCAAAACCA
GTATTGCCTCTGCCATCGCTGGAACGACCAAGTATGCCTTTCGAACTTTCAATGCGACAGTTGATAGTAAAAAGCGACTG
CAAGAAATCTCGGAAGAAGCTAAATTTTCTGGTGGTCTCGTCCTATTGCTAGACGAAATTCATCGACTAGATAAGACCAA
GCAAGACTTCCTCTTGCCTCTCTTGGAAAGTGGACTGGTCATCATGATTGGAGCAACGACTGAAAATCCTTTCTTCTCTG
TCACTCCTGCCATTCGTAGCCGTGTTCAAATTTTCGAGTTGGAACCTCTGTCTAACCAAGACGTCAAAGAGGCCCTGCAG
ATAGCTCTAAGTAACCCTGAACGTGGTTTTGATTTTCCAATAGAACTAGATGAGGATGCGCTGGATTTCATCGCAACCTC
TACAAACGGAGACCTTCGCTCTGCCTTTAACTCACTGGACTTGGCTGTTCTCTCTACCCCTGAGAATGACGAGGGCATTC
GCCACATCACCTTAGACATCATGGAAAATAGTCTTCAGAGAAGCTACATCACTATGGACAAGGATGGAGACGGTCACTAT
GATGTTCTATCTGCCCTGCAAAAGTCTATCCGTGGCTCAGATGTGGATGCCAGTCTCCACTATGCTGCCCGCTTGATTGA
GGCTGGGGATCTGCCTAGTCTCGCTCGTCGCTTGACTGTTATCGCCTATGAAGATATTGGCTTAGCCAATCCTGAGGCCC
AGATTCATACCGTGACTGCTCTGGATGCTGCACAAAGGATTGGTTTCCCCGAAGCCCGCATTCTCATTGCCAATGTCGTG
ATTGATTTGGCCCTTTCTCCAAAATCCAACTCAGCCTATGTAGCTATGGATAAGGCACTTGCTGACCTCAAAACATCAGG
GCACTTGCCTATTCCGCGACACCTGCGTGATGGGCACTACAGTGGAAGCAAGGAACTGGGGAATGCCCAAGACTATCTCT
ATCCACACAACTATCCTGGAAATTGGATCAAGCAAGACTATCTGCCAGAAAAAATTCGTAATCATCACTATTTCCAAGCA
GAAGATACTGGTAAATATGAACGGGCTTTGGCTCAAAGAAAGGAAGCTATCGATCGTTTGCGAAAAATCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-416)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

57.518

99.054

0.57