Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   DQM79_RS08220 Genome accession   NZ_LS483401
Coordinates   1612933..1614201 (+) Length   422 a.a.
NCBI ID   WP_002987975.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NCTC10085     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1607933..1619201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM79_RS09230 - 1608181..1608297 (+) 117 Protein_1519 IS3 family transposase -
  DQM79_RS08195 (NCTC10085_01615) - 1608399..1609262 (+) 864 WP_002987985.1 IS982-like element ISSpy2 family transposase -
  DQM79_RS08200 (NCTC10085_01616) - 1609406..1609747 (-) 342 WP_002987983.1 hypothetical protein -
  DQM79_RS08210 (NCTC10085_01617) pabB 1610544..1612301 (+) 1758 WP_024623437.1 aminodeoxychorismate synthase component I -
  DQM79_RS08215 (NCTC10085_01618) - 1612334..1612900 (+) 567 WP_002987977.1 aminodeoxychorismate/anthranilate synthase component II -
  DQM79_RS08220 (NCTC10085_01619) rarA 1612933..1614201 (+) 1269 WP_002987975.1 replication-associated recombination protein A Machinery gene
  DQM79_RS08235 (NCTC10085_01622) - 1614700..1615140 (+) 441 WP_011018265.1 GNAT family N-acetyltransferase -
  DQM79_RS08240 (NCTC10085_01623) - 1615195..1615665 (+) 471 WP_002987971.1 DNA topology modulation protein -
  DQM79_RS08245 (NCTC10085_01624) - 1615950..1616651 (+) 702 WP_002987970.1 exotoxin beta-grasp domain-containing protein -
  DQM79_RS08250 (NCTC10085_01625) - 1616978..1617202 (-) 225 WP_002987967.1 hypothetical protein -
  DQM79_RS08255 (NCTC10085_01626) - 1617381..1619009 (+) 1629 WP_024623436.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46629.07 Da        Isoelectric Point: 6.3777

>NTDB_id=1023014 DQM79_RS08220 WP_002987975.1 1612933..1614201(+) (rarA) [Streptococcus pyogenes strain NCTC10085]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKELGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1023014 DQM79_RS08220 WP_002987975.1 1612933..1614201(+) (rarA) [Streptococcus pyogenes strain NCTC10085]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTCCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCCTTACTTGAGAACGGCACCATTATCATGATTGGCGCAACCACTGAGAATCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGGGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCTCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCAAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATTTGAGAGATGGGCATTATGCTGGCAGTAAAGAACTGGGCAATGCCAAAGATTACCTCT
ACCCTCACGCCTATCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGACAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.192

98.815

0.595