Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB2M35_RS09260 Genome accession   NZ_CP161902
Coordinates   1780879..1781658 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain DYJ22     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1775879..1786658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M35_RS09240 (AB2M35_09240) trmFO 1776572..1777879 (+) 1308 WP_069837510.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB2M35_RS09245 (AB2M35_09245) xerC 1777947..1778861 (+) 915 WP_014479777.1 tyrosine recombinase XerC -
  AB2M35_RS09250 (AB2M35_09250) clpQ 1778874..1779419 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  AB2M35_RS09255 (AB2M35_09255) hslU 1779436..1780839 (+) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  AB2M35_RS09260 (AB2M35_09260) codY 1780879..1781658 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB2M35_RS09265 (AB2M35_09265) flgB 1782038..1782427 (+) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  AB2M35_RS09270 (AB2M35_09270) flgC 1782427..1782879 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  AB2M35_RS09275 (AB2M35_09275) fliE 1782890..1783210 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  AB2M35_RS09280 (AB2M35_09280) fliF 1783256..1784866 (+) 1611 WP_046160402.1 flagellar basal-body MS-ring/collar protein FliF -
  AB2M35_RS09285 (AB2M35_09285) fliG 1784879..1785895 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  AB2M35_RS09290 (AB2M35_09290) fliH 1785888..1786640 (+) 753 WP_014479782.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=1022987 AB2M35_RS09260 WP_003220850.1 1780879..1781658(+) (codY) [Bacillus subtilis strain DYJ22]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1022987 AB2M35_RS09260 WP_003220850.1 1780879..1781658(+) (codY) [Bacillus subtilis strain DYJ22]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment