Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABU640_RS00910 Genome accession   NZ_CP161854
Coordinates   189514..190374 (-) Length   286 a.a.
NCBI ID   WP_001908542.1    Uniprot ID   -
Organism   Vibrio cholerae strain C3616     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 184514..195374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU640_RS00880 (ABU640_00880) gspL 184772..185983 (+) 1212 WP_001965882.1 type II secretion system protein GspL -
  ABU640_RS00885 (ABU640_00885) gspM 185993..186490 (+) 498 WP_000661339.1 type II secretion system protein M -
  ABU640_RS00890 (ABU640_00890) - 186492..187250 (+) 759 WP_032479619.1 type II secretion system protein N -
  ABU640_RS00895 (ABU640_00895) cysQ 187302..188129 (-) 828 WP_000106798.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ABU640_RS00900 (ABU640_00900) nudE 188152..188700 (-) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  ABU640_RS00905 (ABU640_00905) nfuA 188839..189426 (-) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  ABU640_RS00910 (ABU640_00910) comF 189514..190374 (-) 861 WP_001908542.1 ComF family protein Machinery gene
  ABU640_RS00915 (ABU640_00915) bioH 190310..191071 (+) 762 WP_001240434.1 pimeloyl-ACP methyl ester esterase BioH -
  ABU640_RS00920 (ABU640_00920) - 191232..191702 (+) 471 WP_000961393.1 hypothetical protein -
  ABU640_RS00925 (ABU640_00925) - 191797..194118 (-) 2322 WP_000030079.1 Tex family protein -
  ABU640_RS00930 (ABU640_00930) greB 194363..194845 (+) 483 WP_000850492.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32401.36 Da        Isoelectric Point: 7.9437

>NTDB_id=1022749 ABU640_RS00910 WP_001908542.1 189514..190374(-) (comF) [Vibrio cholerae strain C3616]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTPVDQCGQCLGQPPPWRKLMCVGDYRFPLSDVVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWQRRWLRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLSGAFVLNHLPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1022749 ABU640_RS00910 WP_001908542.1 189514..190374(-) (comF) [Vibrio cholerae strain C3616]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCCC
AGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTTCCAC
TTAGTGATGTGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACGAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTACATTGGCAGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCGCGCGAGTTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGACTCAGCAAGGCGCAGCGAATCCACAACCTGAGCGGTGCGTTTGTGCTCAATCACCTACCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

97.203

100

0.972
  comF Vibrio campbellii strain DS40M4

47.479

83.217

0.395

Multiple sequence alignment