Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LZ906_RS06490 Genome accession   NZ_CP161000
Coordinates   1379773..1381617 (+) Length   614 a.a.
NCBI ID   WP_250675196.1    Uniprot ID   -
Organism   Paraclostridium ghonii strain NCTR 3900     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1374773..1386617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ906_RS06465 (LZ906_006465) - 1375390..1375779 (+) 390 WP_307504454.1 hypothetical protein -
  LZ906_RS06470 (LZ906_006470) - 1375835..1376242 (+) 408 WP_250676049.1 hypothetical protein -
  LZ906_RS06475 (LZ906_006475) - 1376445..1376633 (+) 189 WP_250676048.1 ferredoxin -
  LZ906_RS06480 (LZ906_006480) - 1376981..1377424 (-) 444 WP_250675194.1 MarR family winged helix-turn-helix transcriptional regulator -
  LZ906_RS06485 (LZ906_006485) - 1377576..1379780 (+) 2205 WP_250675195.1 ABC transporter ATP-binding protein -
  LZ906_RS06490 (LZ906_006490) rcrQ 1379773..1381617 (+) 1845 WP_250675196.1 ABC transporter ATP-binding protein Regulator
  LZ906_RS06495 (LZ906_006495) cspD 1381728..1381931 (+) 204 WP_250675197.1 cold-shock protein CspD -
  LZ906_RS06500 (LZ906_006500) asnB 1382132..1383970 (+) 1839 WP_250675198.1 asparagine synthase (glutamine-hydrolyzing) -
  LZ906_RS06505 (LZ906_006505) - 1383990..1384679 (+) 690 WP_250675199.1 response regulator transcription factor -
  LZ906_RS06510 (LZ906_006510) - 1384682..1386136 (+) 1455 WP_250675200.1 cell wall metabolism sensor histidine kinase WalK -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68406.23 Da        Isoelectric Point: 7.2342

>NTDB_id=1022281 LZ906_RS06490 WP_250675196.1 1379773..1381617(+) (rcrQ) [Paraclostridium ghonii strain NCTR 3900]
MSNRKQNTPKMGGPMGGMRGTEKAKDFKGTMKNLFNYLNPYRMALLIVVIFAIGSSAFSIVGPKILGKATTEIFQGLVRK
VSNQGNAGIDFDYIGRIILILLGLYVISAIFSFIQSFIVSGISQKVSYKLRKEISEKINRMPLKYFDKRTHGEVLSRVTN
DIDTLSQNLNQIMTQIITSVTTVIGVLIMMLSISWQMTIVSLLILPISMIIIGFIVKNSQAHFKSQQKYLGNVNGQVEEV
YGGHNIVKAFNREDASIAEFNELNDKLYESAWKSQFLSGMMMPMMTFIGNLGYVLVSILGGYFTIKKTIEVGDILSFIQY
VRSFNQPIAQTAQIANIMQSMAAAAERAFEFLDEDEEVQISDNPVSTKNIKGDVAFDHVNFGYSEDKIIINDFTTNIKAG
QKVAIVGPTGAGKTTVVKLLMRFYDINKGAILIDGKNINDFNRADLRSLFGMVLQDTWLFNGSIMENIRYSKLDATDEEV
IKASKAAHVHHFVKTLPAGYKMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMGNLMEGR
TSFIIAHRLSTIKDADLILVMKDGDIIEQGSHQELLKDDGFYASLYNSQFEDCE

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=1022281 LZ906_RS06490 WP_250675196.1 1379773..1381617(+) (rcrQ) [Paraclostridium ghonii strain NCTR 3900]
ATGAGTAATAGAAAACAAAATACTCCTAAAATGGGCGGACCTATGGGAGGAATGAGAGGAACAGAAAAAGCAAAAGATTT
TAAAGGAACAATGAAAAATCTTTTTAATTATTTAAATCCGTATAGAATGGCACTATTAATAGTAGTAATATTTGCAATAG
GAAGTTCTGCATTTTCTATAGTAGGTCCTAAAATATTAGGTAAAGCTACAACGGAGATATTCCAAGGTCTCGTTAGAAAA
GTTAGCAATCAAGGAAATGCTGGTATAGACTTTGATTATATAGGTAGAATAATTTTGATTTTATTAGGACTTTATGTAAT
AAGTGCTATATTCTCATTTATTCAATCGTTTATAGTTTCTGGAATATCTCAAAAAGTTTCATACAAGCTTAGAAAAGAAA
TTTCAGAGAAAATAAATCGTATGCCACTTAAATATTTTGATAAAAGAACACATGGTGAAGTTTTATCTAGAGTTACAAAT
GATATAGATACATTAAGTCAAAACTTAAATCAAATTATGACTCAAATTATTACTTCTGTTACAACAGTAATAGGTGTTCT
TATAATGATGTTATCTATAAGTTGGCAAATGACTATAGTTTCATTATTAATACTACCTATATCTATGATAATAATAGGGT
TTATTGTTAAGAATTCACAAGCTCACTTTAAATCTCAACAAAAGTACCTAGGGAATGTAAATGGGCAAGTTGAAGAAGTT
TATGGTGGACATAATATAGTAAAAGCATTTAATAGAGAAGATGCATCTATAGCAGAATTTAATGAGTTAAATGATAAGTT
ATATGAATCTGCATGGAAATCTCAATTCCTATCAGGAATGATGATGCCAATGATGACTTTTATAGGAAACTTAGGGTATG
TTTTAGTATCTATACTAGGTGGATATTTTACAATCAAAAAGACTATTGAAGTTGGGGATATACTTTCATTTATACAATAT
GTAAGAAGTTTTAACCAACCAATAGCTCAAACAGCACAAATTGCAAATATAATGCAATCTATGGCAGCAGCGGCAGAAAG
AGCATTTGAATTCTTAGATGAAGATGAAGAAGTTCAAATAAGTGATAATCCAGTTAGTACTAAAAATATCAAAGGAGATG
TAGCTTTTGATCATGTTAACTTTGGATATTCAGAAGATAAAATAATAATAAATGACTTTACAACAAATATAAAAGCTGGT
CAAAAAGTAGCTATAGTTGGACCTACTGGAGCAGGAAAAACTACAGTTGTAAAATTATTAATGCGTTTTTATGATATAAA
TAAAGGTGCTATACTAATCGATGGTAAAAACATTAATGATTTTAATAGAGCTGATTTAAGAAGCTTATTTGGAATGGTTT
TACAAGATACATGGTTATTTAATGGTAGTATAATGGAAAACATAAGATACTCTAAGCTTGATGCTACAGATGAAGAAGTT
ATAAAAGCATCAAAAGCAGCTCATGTACACCACTTTGTAAAAACTCTTCCAGCAGGATATAAAATGGAGTTAAATGAAGA
GGCGAGCAACGTATCTCAAGGTCAAAAACAACTTTTAACTATAGCTCGTGCTATTTTAGCAGATCCTAAGATACTTATAC
TTGATGAAGCTACAAGTTCAGTGGACACTCGTACAGAAGTTTTAATACAAAAAGCTATGGGTAACCTTATGGAAGGTAGA
ACAAGTTTTATAATAGCTCATAGATTATCAACTATAAAAGATGCAGATTTAATATTAGTTATGAAGGATGGAGATATAAT
AGAACAAGGAAGCCATCAAGAATTATTAAAAGATGATGGGTTCTATGCATCTTTATACAATAGTCAATTTGAAGACTGTG
AATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(391-539)

ABC transporter transmembrane region (ABC_membrane)

(45-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.536

95.44

0.492

Multiple sequence alignment