Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   ABZM97_RS13800 Genome accession   NZ_CP160797
Coordinates   2802534..2804894 (-) Length   786 a.a.
NCBI ID   WP_087992281.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2797534..2809894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS13780 (ABZM97_13780) - 2797712..2799064 (+) 1353 WP_367386884.1 IS1182 family transposase -
  ABZM97_RS13785 (ABZM97_13785) dtd 2799191..2799631 (-) 441 WP_087992278.1 D-aminoacyl-tRNA deacylase -
  ABZM97_RS13790 (ABZM97_13790) relA 2799644..2801848 (-) 2205 WP_087992279.1 GTP diphosphokinase -
  ABZM97_RS13795 (ABZM97_13795) - 2802016..2802528 (-) 513 WP_087992280.1 adenine phosphoribosyltransferase -
  ABZM97_RS13800 (ABZM97_13800) recJ 2802534..2804894 (-) 2361 WP_087992281.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  ABZM97_RS13805 (ABZM97_13805) - 2804961..2805293 (-) 333 WP_087992282.1 lipopolysaccharide assembly LapA domain-containing protein -
  ABZM97_RS13810 (ABZM97_13810) - 2805370..2805867 (-) 498 WP_367386885.1 cation:proton antiporter regulatory subunit -
  ABZM97_RS13815 (ABZM97_13815) secDF 2806027..2808240 (-) 2214 WP_367386886.1 protein translocase subunit SecDF -
  ABZM97_RS13820 (ABZM97_13820) comN 2808279..2808575 (-) 297 WP_087992285.1 post-transcriptional regulator ComN -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88106.67 Da        Isoelectric Point: 5.0027

>NTDB_id=1022046 ABZM97_RS13800 WP_087992281.1 2802534..2804894(-) (recJ) [Bacillus vallismortis strain BL-01]
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFNDPFEMKGMKEAAERIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVYAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHDENRLI
ATLGLERLRRTNRLGLKELIKLSGGDIGEANEETVGFQLAPRLNAVGRIEQADPAVHLLMTEDSFEAGELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQQSLDQTAIVVAKAGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPDLRNRLNQIADNTLTEEDFIPVQEVDLVCGVEDITVDSITEMNLLSPFGMLN
PKPHVLVENAVLEDVRKIGANKNHVKMTVRNESSQLDCVGFNKGELEEGIVRGSRISIVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRMWEDTVSALPSAKRAIVSFKEDSTTLLQTEDLRREVHVISSEDQAKALDLDGAYIVLLDPPPSLDM
LAHLLEGKMPERIYFIFLNQEDHFLSAFPARDHFKWYYGFLLKRGSFDVKQHGSELARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVISGVKKRDLTDSQTYQAKKQLMELDQKLNYSSAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=1022046 ABZM97_RS13800 WP_087992281.1 2802534..2804894(-) (recJ) [Bacillus vallismortis strain BL-01]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGCATAT
AACACCTCTTGTTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACAGCAGAAAGCGCAAGGCTGTTTTTACATACAAAGG
ATGCCGATTTTAATGATCCTTTTGAAATGAAGGGCATGAAAGAAGCGGCAGAGCGAATAAAACAGGCGATATCACAACAA
GAACAGATTATGATATATGGCGATTATGATGCCGATGGAGTTACCAGTACGTCAGTGATGCTGCACACACTGCAAAAGCT
GTCGGCTCAAGTTGATTTTTATATACCTGACCGCTTTAAAGAAGGCTACGGCCCTAATGAACAGGCATTTCGTTCGATTA
AGGAACGGGGCTTCTCTCTGATTATTACGGTTGATACAGGAATTGCCGCTGTACATGAAGCAAAGGTGGCAAAGGAACTC
GGACTGGATGTCATCATTACAGATCACCATGAGCCGGGACCGGAACTTCCGGATGTTTACGCGATCGTCCACCCGAAGCA
GCCGGGCTGCACCTACCCGTTTAAAGAACTGGCCGGAGTCGGAGTCGCGTTTAAGCTTGCCCACGCTTTATTGGGCGAAC
TCCCAGATGAATTGCTTGACCTGGCGGCAATCGGCACCATTGCCGATCTAGTCCCGTTGCATGACGAAAACAGATTAATT
GCAACACTGGGACTTGAAAGGCTTCGTCGGACGAATCGGCTGGGCTTAAAAGAGCTGATCAAGCTGTCAGGCGGAGACAT
CGGAGAAGCGAACGAAGAAACAGTCGGGTTCCAGCTTGCACCAAGGCTGAATGCCGTCGGAAGAATTGAACAGGCGGATC
CCGCTGTTCATTTGCTCATGACAGAGGATTCGTTTGAAGCGGGAGAGCTTGCCGCTGAAATTGACCAGCTGAACAAAGAG
CGCCAAAAGATGGTCAGTAAAATGACGGATGAAGCGATTGAAATGGTTGAACAGCAAAGCCTCGATCAAACTGCAATCGT
CGTGGCCAAAGCCGGATGGAATCCAGGAGTCGTCGGAATTGTGGCTTCAAAGCTTGTGGACCGTTTCTACCGCCCGGCCA
TTGTGCTTGGCATTGATGAAGAAAAAGGGATCGCTAAAGGTTCGGCCCGGAGCATCAGGGGTTTTAATTTATTCGAAAGC
CTTTCTGAATGCAGAGATATTCTTCCTCATTTCGGCGGCCATCCAATGGCGGCGGGGATGACGCTGAATGCCGAAGATGT
GCCGGATTTGCGAAACAGGCTGAATCAAATAGCGGACAATACGCTTACGGAAGAGGATTTTATTCCTGTACAGGAAGTCG
ATCTCGTCTGCGGTGTCGAGGACATTACGGTTGATAGCATTACAGAAATGAACCTGCTGTCCCCCTTTGGCATGCTAAAC
CCGAAACCGCACGTTCTCGTAGAAAACGCTGTGCTGGAAGATGTCCGGAAGATTGGAGCAAATAAAAATCATGTCAAAAT
GACGGTCAGAAACGAGTCATCTCAGCTTGATTGCGTCGGTTTTAATAAAGGTGAGCTTGAAGAAGGCATCGTCCGCGGCT
CAAGAATTTCAATTGTCGGTGAGATGTCTATCAACGAATGGAACAATAGAAAAAAACCGCAGCTTATGATTAAGGATGCC
GCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGGAAACGGATGTGGGAAGACACAGTTTCTGCCCTTCCATCTGCTAA
ACGGGCCATTGTCTCTTTCAAAGAAGACTCAACAACACTTCTTCAGACTGAAGATCTTCGCCGTGAAGTGCACGTCATCA
GTTCTGAAGATCAGGCGAAGGCGTTAGATCTCGATGGTGCTTATATTGTATTACTGGATCCGCCGCCTTCGTTGGACATG
CTCGCACATTTGCTGGAAGGCAAGATGCCTGAGCGGATATATTTTATTTTTCTTAATCAAGAGGATCACTTTTTATCAGC
TTTTCCAGCAAGAGACCACTTTAAATGGTATTATGGGTTTCTTCTGAAAAGAGGTTCTTTTGACGTGAAACAACACGGCT
CAGAGCTTGCGAGACATAAGGGCTGGTCCGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTGATTAGCGGAGTCAAGAAACGCGACTTAACAGACTCACAAACCTATCAGGCGAA
GAAGCAGCTGATGGAATTGGATCAAAAGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

96.056

100

0.961

Multiple sequence alignment