Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ABZM97_RS13720 Genome accession   NZ_CP160797
Coordinates   2783826..2786222 (-) Length   798 a.a.
NCBI ID   WP_202327077.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2778826..2791222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS13700 (ABZM97_13700) - 2781732..2782793 (-) 1062 WP_087992264.1 AI-2E family transporter -
  ABZM97_RS13705 (ABZM97_13705) - 2782890..2783021 (-) 132 WP_087992265.1 YrzQ family protein -
  ABZM97_RS13710 (ABZM97_13710) - 2783043..2783234 (-) 192 WP_087992266.1 hypothetical protein -
  ABZM97_RS13715 (ABZM97_13715) - 2783246..2783770 (-) 525 WP_087992267.1 PRC-barrel domain-containing protein -
  ABZM97_RS13720 (ABZM97_13720) recD2 2783826..2786222 (-) 2397 WP_202327077.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ABZM97_RS13725 (ABZM97_13725) - 2786246..2786866 (-) 621 WP_367387496.1 tetratricopeptide repeat protein -
  ABZM97_RS13730 (ABZM97_13730) mnmA 2786952..2788067 (-) 1116 WP_202327074.1 tRNA 2-thiouridine(34) synthase MnmA -
  ABZM97_RS13735 (ABZM97_13735) - 2788096..2789238 (-) 1143 WP_367386881.1 cysteine desulfurase family protein -
  ABZM97_RS13740 (ABZM97_13740) cymR 2789257..2789673 (-) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  ABZM97_RS13745 (ABZM97_13745) - 2789874..2791139 (+) 1266 WP_367386882.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89210.85 Da        Isoelectric Point: 5.1125

>NTDB_id=1022045 ABZM97_RS13720 WP_202327077.1 2783826..2786222(-) (recD2) [Bacillus vallismortis strain BL-01]
MQQHPDQLNMEEEPYLKGTVNTVIYHNDTNLYTVLKVKVRETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIVHYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADTSVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETT
CLSDGHTYIETEQLIIDTQSLLNQSAKEGQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EVFPIVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHMFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTALRNRLSIQIEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEGQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=1022045 ABZM97_RS13720 WP_202327077.1 2783826..2786222(-) (recD2) [Bacillus vallismortis strain BL-01]
GTGCAGCAGCATCCGGATCAGCTTAACATGGAGGAAGAGCCCTATCTAAAAGGGACAGTCAACACAGTCATCTATCATAA
TGACACCAATTTATATACGGTTCTGAAAGTGAAAGTCAGAGAGACCTCCGAAGCCATTGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAGATCGTAACCCATCCAAAATTCGGGCTC
CAATTTCAGGCGGAGCATTTCAAAAAGGAGATTCCGACGACTAAAGAAGGCATCGTTCACTATTTATCGAGTGATTTGTT
CGAGGGAATCGGCAAAAAAACAGCTGAAGAAATTGTGAAAAAACTGGGTGACAGCGCGATTAATAAAATACTAGCTGACA
CTTCAGTGCTTTACGATGTTCCAAGGCTGTCAAAAAAGAAGGCCGACACGCTAGCCGGCGCCCTGCAGCGGCATCAGGGA
CTGGAACAAATCATGATATCCCTTAATCAGTTTGGATTCGGTCCGCAGCTGTCTATGAAAATCTATCAAGCCTATGAATC
GGAGACGCTTGAAAAGATTCAGGAAAACCCTTATCAGCTTGTGAAAGATGTAGAAGGCATCGGGTTTGGAAAAGCGGATG
AACTGGGCAGCAGAATGGGGCTTTCGGGTAATCATCCTGAGCGGGTAAAAGCCGCCATTTTGTACACGCTTGAAACAACT
TGTCTGTCAGATGGGCATACGTACATAGAAACGGAACAGCTCATTATCGATACCCAATCACTGTTAAATCAGTCAGCAAA
GGAAGGGCAGCGCATCACAGAAATGGATGCAGCTAACGCGATTATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAAG
ATGGCCGCTGTTATTTCCCATCGCTGTTTTACGCGGAACAAAATGTTGCGAAGCGCGTGAAACATATCGCAAGCCAAACC
GAATATGACGACCAGTTTCCTGAATCAGAATTTCTGCTCGCTTTGGGAGAACTGGAGGAACGGATGAACGTTCAGTATGC
CCCCAGCCAAAAGGAAGCGATTCAAAAAGCCCTTTCCTCGCCGATGCTGCTTTTAACGGGAGGCCCGGGAACAGGGAAAA
CGACGGTAATCAGAGGGATTGTCGAACTGTACGGAGAGCTTCACGGTGTGTCGCTAGACCCGTCAGCTTATAAAAAGGAT
GAAGTCTTTCCGATTGTATTGGCCGCACCGACAGGGAGAGCGGCGAAACGGATGAGTGAATCAACGGGCCTTCCGGCAGT
CACGATTCACAGGCTCCTTGGCTGGAATGGCGCAGAGGGCTTTACCCATACAGAGGATCAGCCGATCGAAGGGAAGCTGT
TAATCATCGATGAAGCGAGTATGCTTGATATATGGCTTGCAAACCATATGTTCAAGGCGATCCCTGATCATATTCAAATC
ATCATCGTCGGAGACGAAGATCAGCTGCCTTCTGTCGGTCCGGGCCAAGTGCTGAGAGACCTTTTGGCATCTCAGGTGAT
ACCCACTGTGAGACTGACAGATATTTACCGCCAGGCGGAAGGATCATCAATCGTCGAGCTTGCCCATCAGATGAAAAATG
GTTTGCTGCCAAACAATTTGACTGCCCCGACGAAGGACCGTTCCTTTATTCGCTGCGGAGGATCGCAAATTAAAGAGGTA
GTTGAAAAGGTCGTCGCCAATGCATTGAAAAAAGGCTATACGGCAAAGGACATTCAGGTTCTCGCTCCGATGTACAGAGG
AAAAGCCGGGATCAATGAACTAAATGTAATGCTGCAGGACATTTTAAATCCTCCTAAAGAAAAACGGAGGGAATTGAAAT
TCGGAGATGTTGTCTACAGAACCGGAGATAAAATTTTGCAGCTCGTCAATCAGCCGGAAAACAATGTATTCAACGGAGAT
ATTGGCGAAATTACGTCGATATTTTATGCGAAGGAAAATACAGAAAAAGAAGATATGGCTGTCGTTTCTTTTGACGGGAA
TGAAATGACGTTTACGAAAAAAGACTTTAACCAGTTTACACACGCGTATTGTTGCTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTGGTGAAAGGCTATTATAGAATGCTCAGAAGAAACCTTCTTTATACCGCGATTACA
AGAGCGAAGAAGTTTCTCATTTTATGCGGAGAAGAGGAGGCGCTGGAGTGGGGCGTGAAAAATAATGACGCAACGGTCAG
GCAGACCGCCTTGAGAAACAGGCTCTCAATACAGATTGAGGAAATGGATGCTGAGCTTGAGGCTTTGCAAAAAGAGCTCC
CATTCAGCGTACACGATGCCAATATTGGTATGGAAGGCATTACACCATTCGATTTTATGAAAGAAGGACAGCTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

AAA domain (AAA_30)

(346-553)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

97.742

99.875

0.976

Multiple sequence alignment