Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ABZM97_RS08880 Genome accession   NZ_CP160797
Coordinates   1796735..1797514 (+) Length   259 a.a.
NCBI ID   WP_087992061.1    Uniprot ID   -
Organism   Bacillus vallismortis strain BL-01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1791735..1802514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM97_RS08860 (ABZM97_08860) trmFO 1792429..1793736 (+) 1308 WP_087992064.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ABZM97_RS08865 (ABZM97_08865) xerC 1793803..1794717 (+) 915 WP_087992063.1 tyrosine recombinase XerC -
  ABZM97_RS08870 (ABZM97_08870) clpQ 1794730..1795275 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ABZM97_RS08875 (ABZM97_08875) hslU 1795283..1796695 (+) 1413 WP_277986970.1 HslU--HslV peptidase ATPase subunit -
  ABZM97_RS08880 (ABZM97_08880) codY 1796735..1797514 (+) 780 WP_087992061.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ABZM97_RS08885 (ABZM97_08885) flgB 1797896..1798285 (+) 390 WP_087991586.1 flagellar basal body rod protein FlgB -
  ABZM97_RS08890 (ABZM97_08890) flgC 1798285..1798737 (+) 453 WP_087991587.1 flagellar basal body rod protein FlgC -
  ABZM97_RS08895 (ABZM97_08895) fliE 1798749..1799069 (+) 321 WP_087991588.1 flagellar hook-basal body complex protein FliE -
  ABZM97_RS08900 (ABZM97_08900) fliF 1799115..1800722 (+) 1608 WP_367387396.1 flagellar basal-body MS-ring/collar protein FliF -
  ABZM97_RS08905 (ABZM97_08905) fliG 1800735..1801751 (+) 1017 WP_087991592.1 flagellar motor switch protein FliG -
  ABZM97_RS08910 (ABZM97_08910) fliH 1801744..1802496 (+) 753 WP_367387397.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29027.25 Da        Isoelectric Point: 4.6514

>NTDB_id=1022025 ABZM97_RS08880 WP_087992061.1 1796735..1797514(+) (codY) [Bacillus vallismortis strain BL-01]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFQDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1022025 ABZM97_RS08880 WP_087992061.1 1796735..1797514(+) (codY) [Bacillus vallismortis strain BL-01]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTGAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGACGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGACCGCATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AACGTTCCTGAAACATCTTCTAACTTGGATATTAACAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTACCAATCATCGGAGGCGGAGAAAGATTAGGGACACTCATTCTTTCACGTTTACAGGATC
AATTTCAAGACGATGATTTAATTCTCGCTGAATACGGTGCTACAGTTGTCGGAATGGAAATCTTGCGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGTAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGTCTTCTCGTTGCAAGTAAAATCGCAGACCGCGTCGGCATTACCC
GATCTGTTATTGTGAACGCACTCAGAAAGCTGGAAAGCGCTGGTGTCATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTGCTTAACAACAAATTCCTAATTGAATTAGAAAATCTCAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment