Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   DQM97_RS02005 Genome accession   NZ_LS483378
Coordinates   377945..380287 (+) Length   780 a.a.
NCBI ID   WP_002959275.1    Uniprot ID   A0ABN5LLN5
Organism   Streptococcus sobrinus strain NCTC12279     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 372945..385287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM97_RS01985 (NCTC12279_00398) lepB 374990..375634 (-) 645 WP_002959271.1 signal peptidase I -
  DQM97_RS01990 (NCTC12279_00399) rnhC 375650..376573 (-) 924 WP_002959272.1 ribonuclease HIII -
  DQM97_RS01995 (NCTC12279_00400) - 376740..377048 (+) 309 WP_002959273.1 hypothetical protein -
  DQM97_RS02000 (NCTC12279_00401) - 377052..377570 (+) 519 WP_002959274.1 CvpA family protein -
  DQM97_RS02005 (NCTC12279_00402) mutS/mutS2 377945..380287 (+) 2343 WP_002959275.1 endonuclease MutS2 Machinery gene
  DQM97_RS02010 (NCTC12279_00403) - 380355..380768 (+) 414 WP_002959277.1 acyl-CoA thioesterase -
  DQM97_RS02015 (NCTC12279_00404) - 380822..381637 (+) 816 WP_002959279.1 Cof-type HAD-IIB family hydrolase -
  DQM97_RS02020 (NCTC12279_00405) - 381880..382470 (-) 591 WP_231910495.1 IS982 family transposase -
  DQM97_RS02025 - 382646..382912 (+) 267 Protein_350 transposase -
  DQM97_RS11040 - 382923..383045 (-) 123 Protein_351 bacteriocin-type signal sequence -
  DQM97_RS02040 (NCTC12279_00407) - 383621..383914 (-) 294 WP_019785063.1 hypothetical protein -

Sequence

Protein


Download         Length: 780 a.a.        Molecular weight: 87343.60 Da        Isoelectric Point: 6.8480

>NTDB_id=1021376 DQM97_RS02005 WP_002959275.1 377945..380287(+) (mutS/mutS2) [Streptococcus sobrinus strain NCTC12279]
MNTKILEALEFAKVKNQFEPYLQTGIAQEELRALLPDTNREKIERAFAEIADMEAIFIEYHGFSIGSIRSLAEPLRRLEL
EADLNVDELLAIKKALQVSAEVGRFYENLENVELTALNRLFENLEAFPKLQGSLQAINDGGFIEDFAGSSLGKIRRQIHQ
GEGQVRQILQDLVKAKSDMLAENLIASRNGRSVLPVRNTYRNKIAGVVHDISASGTTVYIEPRAVVQLNEEITQARADER
HELHRILRELSDLLRPHTQTIRNNAWLLGHLDFVRAKYLFMQEHEASLPSLSEDKTVNLLNVRHPLLTNPVANDLHFSKN
LSIIVITGPNTGGKTIMLKTLGLSQIMAQSGLPILAEPGSKVAIFKEIFADIGDEQSIEQSLSTFSSHMSHIVAILNRAD
GDSLVLLDELGAGTDPQEGASLAMAILEHLRLSDIKTMATTHYPELKAYGIETAHVQNASMEFDVDSLSPTYHFMQGVPG
RSNAFEIARRLGLSQIIVEDAENMTNRDSDVNTIIEELEAQTQETRKRLDYIREVEQENLKFNRAVKKLYNEFSHSYGKE
LAKAQEEIRHMIEQASEESDKILKNLHHKAQLKPHEIIEAKGQLKKLAPSDDLAKNKVLRKAKKQKAARAPKVGDDIIVI
AYGQRGTLINQLKDGRWEAQVGLIKMTLKEAEFNLVKHQESQKARKKKQVNVVKRSASTGPHARLDLRGKRYEEAMQELD
DFIDQALLNNMAQVDIIHGIGTGVIREGVTKYLRSHRHVKSFGYAPQNAGGSGCTIANLG

Nucleotide


Download         Length: 2343 bp        

>NTDB_id=1021376 DQM97_RS02005 WP_002959275.1 377945..380287(+) (mutS/mutS2) [Streptococcus sobrinus strain NCTC12279]
ATGAATACAAAAATCTTGGAGGCCTTGGAATTTGCCAAGGTCAAAAATCAGTTTGAGCCCTATTTACAGACAGGGATTGC
CCAGGAGGAGCTGCGGGCTCTTTTGCCCGATACCAATCGGGAAAAAATTGAGCGGGCTTTCGCAGAAATTGCTGATATGG
AGGCCATTTTCATTGAATATCATGGCTTTTCCATTGGCTCTATCAGGAGTCTAGCAGAGCCCCTGCGGCGTCTGGAGTTA
GAGGCAGACCTCAATGTTGATGAGCTTTTGGCCATCAAGAAGGCCTTGCAGGTGTCTGCGGAGGTCGGTCGCTTTTATGA
AAATTTAGAAAATGTTGAGCTGACGGCCCTTAATCGTCTTTTTGAAAATTTAGAAGCCTTTCCTAAATTGCAGGGGAGCC
TGCAGGCCATCAACGATGGCGGTTTTATCGAAGATTTTGCCGGTTCAAGTCTGGGCAAGATTCGTCGGCAAATTCATCAA
GGCGAAGGCCAGGTGCGACAAATTCTTCAGGACTTGGTCAAGGCTAAGAGCGATATGCTGGCGGAAAATCTGATTGCTAG
CCGGAACGGCCGCTCGGTTCTGCCGGTTCGTAACACCTACCGCAATAAGATTGCTGGGGTCGTCCACGATATTTCGGCTT
CGGGAACAACGGTTTATATTGAGCCTCGAGCTGTGGTCCAACTCAATGAAGAAATTACCCAGGCTCGGGCGGATGAACGC
CATGAGCTCCACCGCATTTTGCGGGAGTTATCAGACCTGCTTCGCCCTCACACCCAGACTATTCGTAATAATGCCTGGCT
GCTTGGTCATCTGGATTTTGTGCGGGCTAAATATCTTTTCATGCAGGAGCATGAGGCCAGTTTACCCAGCCTGTCGGAGG
ATAAGACGGTCAATCTGCTCAATGTTCGTCATCCCCTCTTGACCAATCCAGTTGCCAACGACCTGCATTTTTCGAAGAAT
CTTTCTATTATTGTCATCACCGGTCCCAATACGGGTGGTAAGACCATCATGCTGAAAACTCTGGGCCTCAGCCAAATCAT
GGCTCAGTCAGGTTTGCCCATTCTGGCGGAGCCAGGAAGTAAAGTAGCCATTTTCAAGGAAATTTTCGCGGATATTGGTG
ATGAGCAGTCCATTGAGCAAAGCCTGTCTACCTTTTCCAGTCATATGAGCCATATCGTTGCTATTTTGAATAGGGCTGAC
GGGGACAGTCTGGTTCTCCTAGATGAATTAGGAGCAGGGACTGACCCCCAAGAAGGGGCCAGTCTAGCTATGGCGATTCT
GGAGCACCTGCGGCTCAGCGACATCAAGACCATGGCCACGACCCACTATCCAGAGCTCAAGGCTTACGGCATTGAGACTG
CCCATGTGCAAAATGCCAGCATGGAGTTTGACGTCGATAGCCTCAGCCCTACCTACCACTTTATGCAGGGGGTTCCCGGT
CGCTCCAATGCCTTTGAGATTGCCCGGCGATTGGGGCTCAGTCAAATTATTGTTGAAGATGCGGAAAATATGACCAATCG
GGACAGCGATGTCAATACTATTATCGAGGAACTGGAAGCCCAGACCCAGGAAACCCGCAAGCGACTGGACTACATTCGAG
AAGTTGAGCAGGAAAATCTCAAATTCAATCGAGCAGTCAAGAAGCTCTACAATGAATTCTCTCATTCCTACGGCAAGGAA
CTGGCCAAGGCTCAGGAAGAAATTCGCCACATGATTGAACAGGCCAGCGAGGAGAGTGATAAGATTCTCAAAAACCTCCA
TCACAAGGCCCAACTTAAGCCCCATGAAATCATTGAAGCTAAGGGCCAACTCAAGAAGTTGGCTCCAAGTGATGATCTGG
CTAAAAATAAGGTCCTTCGCAAGGCTAAGAAGCAAAAGGCAGCGCGTGCGCCTAAAGTAGGGGACGATATCATTGTTATC
GCCTACGGTCAGCGTGGCACTCTCATAAATCAGCTCAAGGATGGTCGCTGGGAGGCTCAGGTTGGTCTGATTAAAATGAC
CCTAAAGGAAGCTGAGTTCAATCTCGTGAAACATCAGGAAAGTCAGAAGGCCCGTAAGAAAAAACAAGTTAATGTTGTCA
AAAGGTCCGCAAGCACGGGACCGCACGCTCGTTTGGATCTCCGAGGCAAGCGCTATGAAGAGGCTATGCAGGAACTGGAT
GACTTTATTGATCAGGCTCTGCTCAATAATATGGCTCAGGTCGATATTATTCATGGCATTGGCACGGGCGTGATTCGCGA
AGGCGTGACCAAGTATCTTCGCAGCCACCGCCATGTCAAGAGTTTCGGCTATGCCCCACAAAATGCTGGAGGTTCAGGCT
GTACCATTGCTAACTTAGGCTAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(633-672)

MutS domain V (MutS_V)

(324-506)

Smr domain (Smr)

(705-778)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

38.51

100

0.391