Detailed information NTG1021375

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: DQM97_RS01980
• Genome accession: NZ_LS483378
• Coordinates: 372225..374858 (-)
• Length: 877 a.a.
• NCBI ID: WP_019785604.1
• Uniprot ID: A0ABN5LK48
• Organism: Streptococcus sobrinus strain NCTC12279
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 367225..379858

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM97_RS01960 (NCTC12279_00393)	dinB	368887..369984 (+)	1098	WP_002963014.1	DNA polymerase IV	-
DQM97_RS01965 (NCTC12279_00394)	-	370569..371054 (-)	486	WP_002959266.1	hypothetical protein	-
DQM97_RS01970 (NCTC12279_00395)	-	371110..371694 (-)	585	WP_002959267.1	hypothetical protein	-
DQM97_RS01975 (NCTC12279_00396)	-	371748..372215 (-)	468	WP_002959268.1	hypothetical protein	-
DQM97_RS01980 (NCTC12279_00397)	recD/recD2/recDB	372225..374858 (-)	2634	WP_019785604.1	ATP-dependent RecD-like DNA helicase	Machinery gene
DQM97_RS01985 (NCTC12279_00398)	lepB	374990..375634 (-)	645	WP_002959271.1	signal peptidase I	-
DQM97_RS01990 (NCTC12279_00399)	rnhC	375650..376573 (-)	924	WP_002959272.1	ribonuclease HIII	-
DQM97_RS01995 (NCTC12279_00400)	-	376740..377048 (+)	309	WP_002959273.1	hypothetical protein	-
DQM97_RS02000 (NCTC12279_00401)	-	377052..377570 (+)	519	WP_002959274.1	CvpA family protein	-

Sequence

Protein

• Length: 877 a.a.
• Molecular weight: 97354.28 Da
• Isoelectric Point: 4.3976

>NTDB_id=1021375 DQM97_RS01980 WP_019785604.1 372225..374858(-) (recD/recD2/recDB) [Streptococcus sobrinus strain NCTC12279]
MTELYFSGTVDRIIFENASNFFKILLLEIEETNAPDFDDFEIIITGTMADIMEGEDYTFWGQLTQHPKYGEQLKANRYER
AQLTSAGLIKYFSSDNFKGIGKKTAQRIVETYGDDDTIDKILAQPDKLEAISGLSKVNRANFLARLRANYGTEQILSKLA
EFGLSNRQALEIYDSYKEETLDIIQENPYQLVEDIKGIGFKIADNLAQQLGIESDSPQRFRAALVHSLTETSLERGDTYV
EARDLLESAVNLLEEARQIELNPALVANELTNLIAEDKVQNIGTRIFDNTLYYAEEGIKNNLERILALPLEQDYSDKEIE
AELAEIQDELGVHYDTIQKEAIIQALTSKVFLLTGGPGTGKTTVIKGLIKTYAQLKGIDLNKGDLPIILAAPTGRASRRM
SELTGLPAATIHRHLGLTTDDSDFQTLDDYLDCDLIIIDEFSMVDAWLANQLLSAISSKTQIIIVGDSDQLPSVGPGQVL
ADLLKIPNLPQVSLTKIFRQSEDSTIVTLASQIRQGQLPVDFTTKKADRSYFEAQANHIPSMVQQIVSSAIRSGIQAQEI
QILAPMYRGQAGITNLNTLMQELLNPQKEGESQFLFNDLTFRKGDKVLHLINDAELNVFNGDIGVITDLIPGKYTESKQD
EIWLDFDGSEVIYPRNEWNKITLAYAMSIHKSQGSEFQVVILPLTRQSGRMLQRNLIYTAITRSKSKLIMLGEVSAFDYA
VKNQGTQRKTYLIQRFGQEGQEETTSQQSGPGQAATSQSLGESAEESVTRLTPANSQSEFASDSTADKTGSNNQASAAAD
LKPASKSRLDSQSEVSSSTQTSASDKNEVDKTTTIEQLPEGSPQSYRLTETNILTIDPMIGLTQTDIDSFFKQKTEN

Nucleotide

• Length: 2634 bp

>NTDB_id=1021375 DQM97_RS01980 WP_019785604.1 372225..374858(-) (recD/recD2/recDB) [Streptococcus sobrinus strain NCTC12279]
ATGACAGAACTCTATTTTTCAGGAACTGTTGACCGCATTATTTTTGAAAATGCCAGCAACTTCTTTAAAATTCTCCTCTT
AGAAATTGAAGAGACCAATGCTCCTGACTTTGACGACTTTGAAATCATCATTACAGGTACCATGGCCGATATCATGGAAG
GGGAGGACTATACCTTCTGGGGCCAGTTGACCCAGCACCCCAAGTACGGGGAGCAACTCAAGGCCAATCGCTACGAGCGA
GCCCAACTGACCTCTGCCGGGCTTATCAAGTATTTCTCCAGCGATAACTTTAAGGGAATCGGTAAAAAGACCGCCCAAAG
GATTGTCGAGACCTACGGCGATGACGATACTATTGACAAAATTCTGGCTCAGCCTGATAAGTTGGAGGCTATCTCAGGAC
TTTCCAAGGTCAATCGGGCTAATTTTCTAGCTAGACTAAGGGCCAATTATGGGACCGAGCAGATTCTCTCCAAACTGGCT
GAATTCGGTCTCAGCAACCGCCAGGCCCTGGAAATCTATGACAGCTACAAGGAAGAGACCCTGGACATCATCCAGGAAAA
TCCCTACCAGCTGGTTGAAGATATCAAGGGGATTGGCTTTAAGATTGCCGATAACCTAGCCCAGCAACTAGGTATTGAGA
GTGATTCACCCCAGCGCTTCCGGGCTGCCCTAGTTCACAGTCTGACCGAAACCTCACTTGAGCGGGGTGATACCTATGTC
GAGGCCCGCGACCTCTTGGAGTCTGCCGTCAATCTCTTGGAAGAGGCCAGACAGATAGAATTGAACCCAGCCTTAGTGGC
TAATGAATTGACCAACCTCATCGCTGAAGATAAGGTGCAGAACATAGGCACCCGTATCTTTGACAATACCCTCTACTATG
CCGAAGAAGGCATTAAAAACAATCTGGAACGGATTCTGGCCCTACCTCTTGAGCAAGACTACTCAGACAAGGAAATTGAA
GCTGAGCTAGCAGAGATTCAAGATGAGTTAGGTGTTCACTATGACACCATCCAAAAGGAAGCTATTATTCAAGCTCTGAC
CAGCAAAGTCTTTCTCCTGACAGGGGGACCTGGAACTGGTAAAACGACTGTCATCAAAGGTTTGATCAAGACCTATGCCC
AGCTCAAGGGGATTGACCTTAATAAGGGCGACCTGCCTATCATCTTAGCTGCCCCTACTGGTCGGGCTAGTCGGCGGATG
AGTGAGCTGACGGGGCTACCAGCCGCTACCATCCACCGCCACCTAGGCCTGACTACTGACGACAGCGATTTTCAGACACT
GGATGACTATCTGGACTGTGATCTGATTATTATTGATGAATTTTCTATGGTCGATGCCTGGCTGGCCAATCAATTACTGA
GCGCTATTTCCAGCAAGACCCAGATCATCATCGTTGGTGATAGCGACCAGCTGCCTTCTGTCGGTCCCGGTCAGGTCTTG
GCAGACCTCCTGAAAATTCCTAACCTGCCTCAGGTCAGTCTGACAAAAATCTTCCGCCAGTCAGAAGATTCCACCATTGT
CACCCTGGCTAGTCAAATTCGTCAGGGACAACTGCCAGTAGATTTCACCACCAAGAAGGCCGACCGCTCCTATTTTGAAG
CCCAGGCCAACCACATTCCCAGCATGGTGCAACAGATTGTTAGCTCTGCCATCCGCAGTGGCATTCAGGCCCAGGAAATC
CAAATTCTGGCCCCCATGTACCGTGGCCAAGCGGGAATTACCAACCTCAACACCCTCATGCAGGAGCTCCTCAACCCCCA
GAAAGAGGGAGAGAGCCAATTTCTCTTCAATGACCTAACCTTTCGCAAGGGCGACAAGGTTCTCCACCTCATCAACGATG
CTGAACTCAATGTTTTTAATGGCGACATCGGTGTTATTACCGACCTGATTCCGGGCAAATATACCGAAAGTAAGCAGGAC
GAAATCTGGCTGGACTTTGATGGAAGCGAAGTCATCTACCCCCGCAATGAATGGAACAAAATTACTCTGGCCTATGCCAT
GTCCATTCATAAATCCCAAGGGAGCGAATTTCAGGTGGTCATTCTGCCACTGACACGTCAGAGCGGTCGTATGCTCCAAC
GCAATCTTATCTACACGGCCATCACCCGCTCCAAGAGTAAGCTGATTATGCTGGGAGAGGTTTCTGCCTTTGACTACGCC
GTTAAAAATCAAGGCACCCAACGTAAGACCTATCTCATTCAGCGCTTTGGTCAAGAGGGACAAGAGGAAACTACTTCTCA
GCAATCAGGCCCAGGTCAAGCAGCCACTAGCCAATCCCTTGGCGAGTCAGCAGAAGAATCAGTAACCAGACTCACCCCAG
CAAACAGCCAGTCCGAATTTGCCAGCGACTCAACCGCTGATAAGACTGGCAGCAACAATCAAGCATCAGCTGCTGCTGAC
TTAAAACCAGCTAGTAAATCTAGACTTGACAGCCAATCTGAAGTTAGCAGTTCAACCCAAACTTCAGCATCTGACAAAAA
TGAAGTTGACAAAACCACAACCATTGAACAGCTCCCTGAGGGAAGTCCCCAAAGCTATCGTCTCACCGAAACCAACATAC
TCACCATTGACCCCATGATTGGCCTCACCCAAACTGATATCGACAGTTTCTTTAAACAAAAAACGGAAAACTAG

Domains

Predicted by InterProScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (149-239)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (664-710)

• AAA domain (AAA_30) (335-524)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (576-646)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	43.461	86.317	0.375