Detailed information NTG1021262

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: AB1H92_RS07830
• Genome accession: NZ_CP160452
• Coordinates: 1682825..1685239 (-)
• Length: 804 a.a.
• NCBI ID: WP_115360850.1
• Uniprot ID: A0A380BP49
• Organism: Sporosarcina pasteurii strain DSM 33
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1677825..1690239

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1H92_RS07810 (AB1H92_07820)	-	1678789..1679082 (-)	294	WP_115360858.1	DUF1292 domain-containing protein	-
AB1H92_RS07815 (AB1H92_07825)	ruvX	1679095..1679514 (-)	420	WP_115360856.1	Holliday junction resolvase RuvX	-
AB1H92_RS07820 (AB1H92_07830)	-	1679511..1679783 (-)	273	WP_115360854.1	IreB family regulatory phosphoprotein	-
AB1H92_RS07825 (AB1H92_07835)	alaS	1679847..1682480 (-)	2634	WP_115360852.1	alanine--tRNA ligase	-
AB1H92_RS07830 (AB1H92_07840)	recD2	1682825..1685239 (-)	2415	WP_115360850.1	ATP-dependent RecD-like DNA helicase	Machinery gene
AB1H92_RS07835 (AB1H92_07845)	-	1685253..1685912 (-)	660	WP_115360848.1	lipopolysaccharide assembly protein LapB	-
AB1H92_RS07840 (AB1H92_07850)	mnmA	1685925..1687040 (-)	1116	WP_134268521.1	tRNA 2-thiouridine(34) synthase MnmA	-
AB1H92_RS07845 (AB1H92_07855)	-	1687069..1688211 (-)	1143	WP_115360844.1	cysteine desulfurase family protein	-
AB1H92_RS07850 (AB1H92_07860)	cymR	1688225..1688644 (-)	420	WP_115360842.1	cysteine metabolism transcriptional regulator CymR	-
AB1H92_RS07855 (AB1H92_07865)	-	1688773..1690062 (+)	1290	WP_115360840.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 804 a.a.
• Molecular weight: 89578.29 Da
• Isoelectric Point: 4.6642

>NTDB_id=1021262 AB1H92_RS07830 WP_115360850.1 1682825..1685239(-) (recD2) [Sporosarcina pasteurii strain DSM 33]
MESQTEELYIIGRPFVTIFHNADNLFTICKCSITKTNCDYDEKEIVVKGNFPQLAPEEDYKFIGRLVNHPTYGAQFDVHT
FTKEMPGTETGLVQYLSGDLFPGIGAKTASTIVETLGTDAINKILNDATVLDKVPRLTEERKATLVSVLQQNMGLERTII
QLNEWGFGPKVAMRIYQAYREETIELLTENPYRLTEEIEGVGFQRADELGRHLGITGNHPSRIKAAILYTINEVVQSEGH
VYVEGEVALPEVKRMLEMSQSMEIPYSSISQAIIELVEEGKLSAEKQRLYTPSLYFSEIGFASKIQEIMSNGSEDQFPVS
EIRSAIGEVEERLGVNYAETQVAAIEKALHSPAMILTGGPGTGKTTVIRGFVEVFAELHGLSLDPAEYAKKKEAFPIILA
APTGRAAKRMSESTELPAMTIHRLLGFTGQQKEEETDREIEGKLVIIDEMSMVDTWLGHQLLKALPKDVQILFVGDQDQL
PSVGPGQVLKDMLESNVIPVVELTEIYRQSAGSTIIEMAHMIKRSEWSTNIVGKTSDRSFIAASADRILDAVHQIIDNAI
SKGHSIKDIQVLAPMYKGPAGIDGLNKMIQKMVNPPSSKRKEVTFGDVVYRIGDKVLQLVNQPESNVFNGDMGEVISIIK
ANETVDKKELLVVSYDGIEVTYERKDLNQITLSYCCSIHKSQGSEFPIVIMPIVRAHRKMLKRNLLYTGITRAQKFLILC
GEPEEFKAGILRADELARQTTLQERLNAYGEPHTATDEDSEETLEVEQEEVEKNYELTTDNILAIDPMIGMAGITPYAYV
QDVD

Nucleotide

• Length: 2415 bp

>NTDB_id=1021262 AB1H92_RS07830 WP_115360850.1 1682825..1685239(-) (recD2) [Sporosarcina pasteurii strain DSM 33]
GTGGAAAGTCAAACCGAAGAACTGTATATAATTGGGAGACCGTTCGTTACAATATTTCATAATGCTGATAATCTCTTTAC
GATTTGTAAATGTAGTATTACAAAAACGAACTGTGATTATGATGAAAAAGAAATTGTTGTAAAAGGAAACTTTCCGCAAC
TAGCTCCTGAAGAAGATTATAAATTTATTGGTAGACTTGTGAATCATCCAACGTACGGTGCCCAGTTTGATGTCCATACT
TTTACGAAAGAAATGCCTGGAACAGAAACGGGACTTGTTCAGTATTTATCGGGTGACTTGTTTCCAGGAATTGGGGCGAA
AACTGCTTCCACCATCGTTGAAACACTTGGGACAGATGCCATTAATAAAATATTAAATGATGCAACTGTTTTGGATAAAG
TTCCCCGTTTAACAGAAGAACGGAAGGCTACCCTTGTCTCTGTTTTGCAACAAAACATGGGATTAGAACGAACGATTATT
CAGTTGAATGAATGGGGCTTCGGACCGAAAGTAGCCATGCGAATCTATCAAGCGTACCGTGAAGAAACAATTGAACTATT
AACTGAAAATCCATACCGGTTGACAGAGGAAATTGAGGGCGTCGGTTTTCAACGGGCCGATGAACTCGGTCGACACTTAG
GGATAACAGGCAATCACCCTTCTAGAATTAAAGCTGCCATTTTATATACGATTAATGAAGTTGTGCAATCGGAAGGACAT
GTGTATGTAGAAGGGGAAGTCGCTTTACCTGAAGTAAAGCGCATGCTTGAAATGAGTCAATCTATGGAAATTCCCTATAG
TAGTATTTCACAAGCGATCATTGAACTCGTAGAAGAGGGAAAGTTATCTGCCGAAAAACAAAGGCTATACACCCCGTCAT
TATATTTTTCGGAAATAGGCTTTGCGTCAAAAATACAAGAAATTATGAGTAATGGGTCTGAAGATCAATTTCCAGTTTCA
GAAATCCGTTCAGCAATCGGTGAAGTGGAAGAGCGTCTTGGCGTCAATTATGCGGAAACACAAGTAGCTGCTATTGAAAA
AGCGCTCCATTCACCCGCGATGATTTTAACAGGTGGTCCAGGTACAGGGAAGACAACGGTAATTCGAGGGTTTGTGGAAG
TTTTTGCGGAACTTCATGGTTTGTCTTTAGATCCAGCAGAATATGCAAAAAAGAAAGAAGCCTTCCCGATTATTTTAGCC
GCTCCGACTGGAAGAGCAGCGAAACGGATGTCCGAATCGACGGAACTACCTGCGATGACAATCCATCGTCTACTCGGTTT
CACAGGCCAGCAAAAAGAAGAAGAAACCGACCGAGAAATCGAAGGGAAACTCGTCATTATCGATGAAATGTCTATGGTCG
ATACATGGCTAGGCCACCAGCTTTTAAAAGCACTCCCAAAAGACGTACAAATTTTATTTGTCGGTGACCAAGATCAATTG
CCTTCCGTCGGACCAGGTCAAGTGCTAAAGGATATGTTGGAATCTAACGTGATTCCAGTAGTCGAACTAACAGAAATTTA
TCGTCAAAGTGCAGGCTCCACAATTATTGAAATGGCCCATATGATAAAACGTTCAGAGTGGTCTACTAACATCGTTGGTA
AAACATCTGACCGTTCTTTTATAGCAGCAAGTGCGGACCGGATTTTGGATGCCGTACATCAAATTATCGATAATGCAATT
TCGAAAGGGCATAGCATAAAAGATATCCAAGTGTTGGCGCCGATGTATAAAGGTCCTGCAGGCATTGACGGCTTAAATAA
AATGATTCAAAAAATGGTGAATCCCCCGAGCTCTAAACGAAAGGAAGTAACATTTGGAGACGTTGTTTACCGGATAGGCG
ACAAAGTGCTTCAACTTGTCAATCAACCGGAAAGCAACGTGTTTAACGGCGATATGGGGGAAGTTATTAGCATTATTAAA
GCAAATGAAACGGTCGATAAAAAAGAACTACTTGTCGTCTCTTATGATGGCATCGAAGTGACCTATGAAAGAAAAGACTT
AAATCAAATTACACTTTCTTATTGTTGCTCCATTCATAAGTCACAAGGAAGCGAATTTCCGATTGTCATTATGCCAATCG
TGCGTGCTCACCGGAAAATGTTAAAACGTAATCTTCTTTATACAGGAATTACACGTGCTCAAAAGTTTTTAATTCTTTGC
GGTGAACCAGAAGAGTTTAAAGCAGGTATTTTAAGGGCAGATGAACTCGCCCGCCAAACGACCTTACAAGAGCGTTTAAA
CGCATATGGTGAACCTCATACTGCTACAGATGAAGATAGTGAAGAAACGCTTGAAGTTGAGCAGGAAGAAGTAGAAAAAA
ATTATGAACTAACGACCGACAATATCCTTGCGATTGACCCGATGATCGGAATGGCTGGTATTACGCCATATGCATACGTA
CAGGATGTCGATTGA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-644)

• Helix-hairpin-helix containing domain (HHH_RecD2) (152-242)

• AAA domain (AAA_30) (337-543)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (673-720)

3D structure

• AlphaFold DB: A0A380BP49

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	52.559	99.627	0.524