Detailed information NTG1020816

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB1F75_RS12185
• Genome accession: NZ_CP160396
• Coordinates: 2379007..2379786 (-)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis subsp. subtilis strain BSP1
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 2374007..2384786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1F75_RS12155 (AB1F75_12155)	fliH	2374026..2374778 (-)	753	WP_044052687.1	flagellar assembly protein FliH	-
AB1F75_RS12160 (AB1F75_12160)	fliG	2374771..2375787 (-)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
AB1F75_RS12165 (AB1F75_12165)	fliF	2375800..2377410 (-)	1611	WP_010886506.1	flagellar basal-body MS-ring/collar protein FliF	-
AB1F75_RS12170 (AB1F75_12170)	fliE	2377456..2377776 (-)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
AB1F75_RS12175 (AB1F75_12175)	flgC	2377787..2378239 (-)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
AB1F75_RS12180 (AB1F75_12180)	flgB	2378239..2378628 (-)	390	WP_003245656.1	flagellar basal body rod protein FlgB	-
AB1F75_RS12185 (AB1F75_12185)	codY	2379007..2379786 (-)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB1F75_RS12190 (AB1F75_12190)	hslU	2379826..2381229 (-)	1404	WP_015252099.1	HslU--HslV peptidase ATPase subunit	-
AB1F75_RS12195 (AB1F75_12195)	clpQ	2381246..2381791 (-)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
AB1F75_RS12200 (AB1F75_12200)	xerC	2381804..2382718 (-)	915	WP_003231988.1	tyrosine recombinase XerC	-
AB1F75_RS12205 (AB1F75_12205)	trmFO	2382786..2384093 (-)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=1020816 AB1F75_RS12185 WP_003220850.1 2379007..2379786(-) (codY) [Bacillus subtilis subsp. subtilis strain BSP1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1020816 AB1F75_RS12185 WP_003220850.1 2379007..2379786(-) (codY) [Bacillus subtilis subsp. subtilis strain BSP1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467