Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnK   Type   Regulator
Locus tag   AB1F71_RS05345 Genome accession   NZ_CP160386
Coordinates   1083520..1084833 (-) Length   437 a.a.
NCBI ID   WP_002262199.1    Uniprot ID   Q8DU14
Organism   Streptococcus mutans strain UA159 ykuR deletion     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1078520..1089833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F71_RS05315 (AB1F71_05315) - 1078711..1080021 (-) 1311 WP_002262205.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  AB1F71_RS05320 (AB1F71_05320) - 1080085..1080843 (-) 759 WP_002262204.1 inositol monophosphatase family protein -
  AB1F71_RS05325 (AB1F71_05325) - 1080833..1081111 (-) 279 WP_002279684.1 UPF0223 family protein -
  AB1F71_RS05330 (AB1F71_05330) spx 1081104..1081517 (-) 414 WP_002263835.1 transcriptional regulator Spx -
  AB1F71_RS05335 (AB1F71_05335) - 1081578..1082498 (-) 921 WP_002262201.1 bifunctional riboflavin kinase/FAD synthetase -
  AB1F71_RS05340 (AB1F71_05340) truB 1082529..1083410 (-) 882 WP_002262200.1 tRNA pseudouridine(55) synthase TruB -
  AB1F71_RS05345 (AB1F71_05345) scnK 1083520..1084833 (-) 1314 WP_002262199.1 HAMP domain-containing sensor histidine kinase Regulator
  AB1F71_RS05350 (AB1F71_05350) scnR 1084834..1085523 (-) 690 WP_002262198.1 response regulator transcription factor Regulator
  AB1F71_RS05355 (AB1F71_05355) - 1085698..1086606 (+) 909 WP_002262197.1 ABC transporter ATP-binding protein -
  AB1F71_RS05360 (AB1F71_05360) - 1086606..1087346 (+) 741 WP_002262196.1 ABC transporter permease -
  AB1F71_RS05365 (AB1F71_05365) - 1087343..1088071 (+) 729 WP_002262195.1 ABC transporter permease -
  AB1F71_RS05370 (AB1F71_05370) - 1088190..1089554 (-) 1365 WP_002262194.1 DUF438 domain-containing protein -
  AB1F71_RS05375 (AB1F71_05375) - 1089554..1089787 (-) 234 WP_002262193.1 DUF1858 domain-containing protein -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50393.33 Da        Isoelectric Point: 9.5285

>NTDB_id=1020678 AB1F71_RS05345 WP_002262199.1 1083520..1084833(-) (scnK) [Streptococcus mutans strain UA159 ykuR deletion]
MDTVKFFTKLLTKYVLLVFALIVGVIFVYGLVFLTYLNYYGKEKPELVYTKIAQSSQQDAFNISKRSQKEMDKQKTWAMV
LNQDGQIVQSYRLPQQLKRHYTNADMVKFSRWYLDDYPVFSYVRGQQILVFGYPKKYSLAKFNFYLNTQFIKNFLHLGFV
FLGIIFLFIFVLFSHSKLRIKKEIEPIVSALTFLSQGQSAALNEKGNFSEIKTALNETSHILEESNMMKEQWIRGVSHDL
RNPLMLISGYTSQLEQQYGHGKQTEQIENQIQNMKEMISNLNLSYLLDNQKRHSKFSSLDLAVVLRSVIADILNNYETVI
LHFDLPTEAVLVKGDATLLERAFRNLLLNSIKHSGSNQIDLTYQLFDNKVIIIIADKGTITAQKIVELNQKSTNYESHGM
GTVITKQIIKLHQGETVFSDNHPGLKVTIVLPVTDEF

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=1020678 AB1F71_RS05345 WP_002262199.1 1083520..1084833(-) (scnK) [Streptococcus mutans strain UA159 ykuR deletion]
ATGGATACCGTTAAATTTTTTACGAAGTTATTGACCAAGTATGTTCTATTAGTATTTGCCTTAATTGTAGGAGTTATTTT
TGTTTATGGCTTGGTTTTCTTAACCTATCTTAATTATTATGGAAAGGAAAAACCAGAGCTAGTTTACACCAAAATCGCTC
AATCGAGTCAACAAGATGCGTTCAATATTAGTAAAAGAAGTCAAAAAGAAATGGATAAACAAAAGACTTGGGCTATGGTA
TTAAATCAAGATGGTCAGATCGTCCAATCTTATCGTTTACCTCAACAGCTCAAAAGACATTATACCAATGCTGATATGGT
GAAATTTTCGCGCTGGTATTTAGATGATTATCCTGTTTTTTCCTATGTACGTGGTCAGCAGATTTTAGTTTTTGGCTACC
CTAAAAAGTATTCCCTAGCAAAGTTTAATTTTTATCTGAATACGCAATTTATTAAGAATTTTCTTCATTTAGGGTTTGTT
TTCTTAGGCATCATCTTTTTATTTATCTTTGTTCTTTTTAGTCATTCAAAGCTGCGCATTAAAAAGGAAATAGAGCCGAT
TGTCTCTGCGCTCACTTTCTTGTCGCAAGGTCAAAGTGCTGCTCTTAATGAAAAAGGCAATTTTTCTGAAATTAAGACAG
CTCTCAATGAAACTTCTCATATTTTAGAAGAAAGTAATATGATGAAAGAACAGTGGATTAGAGGAGTCAGTCACGATTTG
CGCAACCCGCTGATGCTGATTTCAGGCTACACCAGTCAATTGGAACAACAATATGGTCATGGAAAGCAAACGGAGCAGAT
TGAAAATCAGATTCAAAATATGAAAGAAATGATTTCTAATCTTAATTTGAGCTACCTGTTGGATAATCAAAAGCGTCATT
CCAAATTTTCAAGCCTTGATTTAGCTGTTGTTCTGCGATCCGTAATTGCTGATATTCTAAATAATTATGAAACAGTTATA
CTTCATTTTGATTTACCTACAGAGGCAGTATTGGTAAAGGGTGATGCCACTTTATTAGAAAGGGCTTTTAGAAATCTTCT
GCTCAATAGTATTAAGCATAGTGGCTCTAATCAGATCGATTTGACTTATCAATTATTTGATAATAAAGTGATTATTATCA
TTGCAGATAAGGGAACTATTACAGCTCAGAAAATTGTAGAACTAAATCAAAAATCAACTAATTATGAGTCGCATGGCATG
GGCACCGTTATCACTAAGCAAATCATAAAACTTCATCAAGGTGAGACTGTCTTTTCAGATAATCATCCAGGTTTGAAAGT
GACGATTGTCTTGCCTGTAACGGATGAATTTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(334-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(228-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DU14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

100

100

1

Multiple sequence alignment