Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB0R67_RS19105 Genome accession   NZ_CP160237
Coordinates   3778616..3779395 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus thuringiensis strain JJ1216     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3763173..3818247 3778616..3779395 within 0


Gene organization within MGE regions


Location: 3763173..3818247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R67_RS19050 (AB0R67_19055) rimP 3764075..3764545 (-) 471 WP_000359095.1 ribosome maturation factor RimP -
  AB0R67_RS19055 (AB0R67_19060) - 3764879..3769180 (-) 4302 WP_053563760.1 PolC-type DNA polymerase III -
  AB0R67_RS19060 (AB0R67_19065) - 3769305..3771005 (-) 1701 WP_090977191.1 proline--tRNA ligase -
  AB0R67_RS19065 (AB0R67_19070) rseP 3771115..3772371 (-) 1257 WP_001090233.1 RIP metalloprotease RseP -
  AB0R67_RS19070 (AB0R67_19075) dxr 3772389..3773531 (-) 1143 WP_000790379.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  AB0R67_RS19075 (AB0R67_19080) cdsA 3773555..3774346 (-) 792 WP_000813592.1 phosphatidate cytidylyltransferase -
  AB0R67_RS19080 (AB0R67_19085) uppS 3774364..3775140 (-) 777 WP_000971296.1 isoprenyl transferase -
  AB0R67_RS19085 (AB0R67_19090) frr 3775226..3775783 (-) 558 WP_000531505.1 ribosome recycling factor -
  AB0R67_RS19090 (AB0R67_19095) pyrH 3775786..3776508 (-) 723 WP_000042669.1 UMP kinase -
  AB0R67_RS19095 (AB0R67_19100) tsf 3776575..3777462 (-) 888 WP_001018577.1 translation elongation factor Ts -
  AB0R67_RS19100 (AB0R67_19105) rpsB 3777566..3778267 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  AB0R67_RS19105 (AB0R67_19110) codY 3778616..3779395 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB0R67_RS19110 (AB0R67_19115) hslU 3779473..3780864 (-) 1392 WP_000550085.1 ATP-dependent protease ATPase subunit HslU -
  AB0R67_RS19115 (AB0R67_19120) hslV 3780887..3781429 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  AB0R67_RS19120 (AB0R67_19125) xerC 3781472..3782371 (-) 900 WP_001101245.1 tyrosine recombinase XerC -
  AB0R67_RS19125 (AB0R67_19130) trmFO 3782437..3783741 (-) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB0R67_RS19130 (AB0R67_19135) topA 3783790..3785868 (-) 2079 WP_001286955.1 type I DNA topoisomerase -
  AB0R67_RS19135 (AB0R67_19140) dprA 3786013..3786882 (-) 870 WP_098284588.1 DNA-processing protein DprA -
  AB0R67_RS19140 (AB0R67_19145) sucD 3786970..3787872 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  AB0R67_RS19145 (AB0R67_19150) sucC 3787892..3789052 (-) 1161 WP_001020790.1 ADP-forming succinate--CoA ligase subunit beta -
  AB0R67_RS19150 (AB0R67_19155) - 3789246..3790019 (-) 774 WP_098284587.1 ribonuclease HII -
  AB0R67_RS19155 (AB0R67_19160) ylqF 3790076..3790966 (-) 891 WP_000236702.1 ribosome biogenesis GTPase YlqF -
  AB0R67_RS19160 (AB0R67_19165) lepB 3790987..3791538 (-) 552 WP_000711852.1 signal peptidase I -
  AB0R67_RS19165 (AB0R67_19170) rplS 3791640..3791984 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  AB0R67_RS19170 (AB0R67_19175) trmD 3792131..3792865 (-) 735 WP_000686899.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AB0R67_RS19175 (AB0R67_19180) rimM 3792865..3793380 (-) 516 WP_000170272.1 ribosome maturation factor RimM -
  AB0R67_RS19180 (AB0R67_19185) - 3793501..3793728 (-) 228 WP_000737399.1 KH domain-containing protein -
  AB0R67_RS19185 (AB0R67_19190) rpsP 3793743..3794015 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  AB0R67_RS19190 (AB0R67_19195) ffh 3794117..3795466 (-) 1350 WP_000863460.1 signal recognition particle protein -
  AB0R67_RS19195 (AB0R67_19200) - 3795479..3795811 (-) 333 WP_000891062.1 putative DNA-binding protein -
  AB0R67_RS19200 (AB0R67_19205) ftsY 3795944..3796933 (-) 990 WP_000007642.1 signal recognition particle-docking protein FtsY -
  AB0R67_RS19205 (AB0R67_19210) smc 3796949..3800518 (-) 3570 WP_075717457.1 chromosome segregation protein SMC -
  AB0R67_RS19210 (AB0R67_19215) rncS 3800666..3801403 (-) 738 WP_001146875.1 ribonuclease III -
  AB0R67_RS19215 (AB0R67_19220) acpP 3801462..3801695 (-) 234 WP_000786062.1 acyl carrier protein -
  AB0R67_RS19220 (AB0R67_19225) fabG 3801765..3802505 (-) 741 WP_000911769.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  AB0R67_RS19225 (AB0R67_19230) fabD 3802505..3803449 (-) 945 WP_090977188.1 ACP S-malonyltransferase -
  AB0R67_RS19230 (AB0R67_19235) plsX 3803464..3804456 (-) 993 WP_000684100.1 phosphate acyltransferase PlsX -
  AB0R67_RS19235 (AB0R67_19240) fapR 3804453..3805046 (-) 594 WP_000747349.1 transcription factor FapR -
  AB0R67_RS19240 (AB0R67_19245) recG 3805135..3807183 (-) 2049 WP_001000823.1 ATP-dependent DNA helicase RecG -
  AB0R67_RS19245 (AB0R67_19250) - 3807474..3809150 (-) 1677 WP_000027131.1 DAK2 domain-containing protein -
  AB0R67_RS19250 (AB0R67_19255) - 3809173..3809535 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  AB0R67_RS19255 (AB0R67_19260) rpmB 3809912..3810100 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  AB0R67_RS19260 (AB0R67_19265) spoVM 3810174..3810254 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  AB0R67_RS19265 (AB0R67_19270) - 3810321..3811001 (-) 681 WP_000752665.1 thiamine diphosphokinase -
  AB0R67_RS19270 (AB0R67_19275) rpe 3811071..3811715 (-) 645 WP_000589974.1 ribulose-phosphate 3-epimerase -
  AB0R67_RS19275 (AB0R67_19280) rsgA 3811718..3812599 (-) 882 WP_001113932.1 ribosome small subunit-dependent GTPase A -
  AB0R67_RS19280 (AB0R67_19285) pknB 3812859..3814832 (-) 1974 WP_000904746.1 Stk1 family PASTA domain-containing Ser/Thr kinase -
  AB0R67_RS19285 (AB0R67_19290) - 3814841..3815593 (-) 753 WP_000648708.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  AB0R67_RS19290 (AB0R67_19295) rlmN 3815598..3816686 (-) 1089 WP_000450550.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  AB0R67_RS19295 (AB0R67_19300) rsmB 3816691..3818025 (-) 1335 WP_001249664.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=1020384 AB0R67_RS19105 WP_000421290.1 3778616..3779395(-) (codY) [Bacillus thuringiensis strain JJ1216]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1020384 AB0R67_RS19105 WP_000421290.1 3778616..3779395(-) (codY) [Bacillus thuringiensis strain JJ1216]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACTTTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGCATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment