Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AB0R75_RS12280 Genome accession   NZ_CP160232
Coordinates   2417036..2419360 (-) Length   774 a.a.
NCBI ID   WP_211062950.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ1622     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2412036..2424360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R75_RS12265 (AB0R75_12265) dtd 2413685..2414128 (-) 444 WP_144520760.1 D-aminoacyl-tRNA deacylase -
  AB0R75_RS12270 (AB0R75_12270) - 2414147..2416357 (-) 2211 WP_012010732.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  AB0R75_RS12275 (AB0R75_12275) - 2416500..2417012 (-) 513 WP_003216770.1 adenine phosphoribosyltransferase -
  AB0R75_RS12280 (AB0R75_12280) recJ 2417036..2419360 (-) 2325 WP_211062950.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AB0R75_RS12285 (AB0R75_12285) - 2419442..2419795 (-) 354 WP_144520766.1 lipopolysaccharide assembly LapA domain-containing protein -
  AB0R75_RS12290 (AB0R75_12290) - 2419847..2420215 (-) 369 Protein_2379 TrkA C-terminal domain-containing protein -
  AB0R75_RS12295 (AB0R75_12295) secDF 2420399..2422627 (-) 2229 WP_144520770.1 protein translocase subunit SecDF -
  AB0R75_RS12300 (AB0R75_12300) - 2422669..2422965 (-) 297 WP_003216788.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 87396.08 Da        Isoelectric Point: 4.8625

>NTDB_id=1020275 AB0R75_RS12280 WP_211062950.1 2417036..2419360(-) (recJ) [Bacillus pumilus strain JJ1622]
MLLSKMRWEYEHPSEEKVKSLSENLNISALTASLLVKRGLEEVEEARSFLFDQKAEFYDPFLLKGMKEAVERINKAIEEQ
ESIVIFGDYDADGVTSTSVLLHTLKELSAKVDFYIPDRFKEGYGPNEQAFRYIKEQGASLVITVDTGIAAVNEARIAKEI
GLDLIITDHHEPSEELPEALAIVHPKQPGCEYPFKELAGVGVAFKVAHALLGKLPTQLLDLAAIGTIADLVPLHDENRWL
AKKGLMQLRQSNRPGLKALLKEAGATLEEANEETVGFQIAPRLNAVGRIEQADPAVHLLMTEDKAEAEELARFVQELNKE
RQKIVSKITEEAIQMVEETDNDQSAIVVAKAGWNPGVVGIVASKLTDTFSRPAIVLGIDEETQMAKGSARSIPGFDLFFH
LSKCRDILPHFGGHPMAAGMTLQADDVPLLRERLNQYADETLTEEDFIPIQRVDAVCKVDELTVEAIEEVGMLSPFGMQN
PKPFIMIEDARLEEIRTIGANQNHIKMSLKDEDKLLDCVGFHQGQLKEEIVTGSRISVIGEMSINEWNNRKKPQLMLKDA
RVDEWQLFDLRGKKDWEKTIFTLDPEKYVVVCFDEDTKQEVNIPIHHVHAENVSTFDVEGKYVVFADVPADEHLLRQLLE
NQKPARVYTVFQRKEDHFMSSFPSRDQFKWLYGFLLKRGSFPLKEQGMELAKHRGWTKDTMIFMTKVFFELGFVKIENGV
LSIVHDAPKKDLTASASYTAKQRLMELDQTLTYSSAKELKEWLNSMMSEVSPVL

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=1020275 AB0R75_RS12280 WP_211062950.1 2417036..2419360(-) (recJ) [Bacillus pumilus strain JJ1622]
ATGTTATTATCCAAAATGCGCTGGGAATATGAACATCCAAGCGAAGAAAAAGTGAAATCACTCTCTGAAAATCTGAATAT
TTCAGCGCTGACTGCATCGCTTCTTGTAAAAAGAGGACTCGAAGAAGTAGAAGAAGCGAGGTCTTTTTTATTTGATCAAA
AAGCCGAATTTTATGATCCATTTCTATTAAAAGGAATGAAAGAAGCAGTAGAGCGCATCAACAAAGCGATCGAAGAGCAG
GAATCGATTGTGATCTTCGGAGACTATGATGCGGATGGTGTGACAAGTACATCTGTGCTTTTACATACATTAAAAGAGTT
GTCTGCGAAAGTAGACTTTTATATTCCAGATCGATTTAAAGAAGGCTACGGGCCTAATGAACAGGCTTTTCGATATATCA
AAGAGCAAGGTGCATCGCTTGTCATCACGGTCGATACAGGCATTGCAGCTGTTAATGAAGCACGTATTGCAAAAGAAATA
GGGTTAGACCTGATTATTACAGATCACCATGAACCAAGTGAGGAGCTGCCTGAGGCACTTGCGATTGTCCATCCGAAGCA
GCCAGGCTGTGAGTATCCCTTTAAAGAGCTTGCCGGTGTAGGTGTGGCGTTTAAAGTGGCGCATGCACTTCTTGGGAAAC
TACCAACTCAGCTGTTAGATCTTGCGGCGATTGGGACAATAGCGGATCTTGTGCCGCTTCATGATGAGAATAGATGGCTT
GCTAAAAAAGGCCTTATGCAGCTTAGACAGTCGAATAGACCGGGGCTGAAGGCGTTATTGAAAGAAGCGGGCGCTACTCT
TGAAGAAGCAAATGAGGAAACGGTCGGCTTTCAAATTGCGCCAAGGCTGAATGCTGTAGGACGAATTGAACAGGCAGATC
CAGCTGTTCATCTTCTTATGACAGAGGATAAAGCTGAAGCAGAAGAACTCGCTCGTTTTGTACAAGAACTGAATAAAGAA
CGTCAAAAAATTGTGAGTAAGATTACAGAAGAAGCCATTCAAATGGTTGAAGAGACAGATAATGACCAGTCTGCCATTGT
TGTAGCGAAAGCTGGCTGGAATCCGGGTGTTGTCGGAATTGTTGCTTCTAAATTGACGGATACATTTTCTCGTCCGGCGA
TTGTGCTTGGAATAGATGAAGAGACACAAATGGCAAAAGGATCAGCGCGGAGTATTCCTGGCTTCGATCTATTTTTCCAT
TTAAGCAAATGCCGCGACATTCTGCCGCATTTCGGTGGGCACCCGATGGCTGCGGGCATGACACTTCAAGCGGATGATGT
TCCTTTACTAAGGGAAAGATTAAATCAATATGCGGATGAAACATTGACAGAAGAAGATTTTATTCCGATTCAGCGGGTCG
ATGCTGTATGTAAGGTAGACGAATTAACGGTTGAAGCGATTGAAGAAGTGGGGATGCTATCACCATTTGGCATGCAAAAC
CCAAAGCCTTTCATCATGATTGAAGATGCGAGACTTGAAGAAATCCGAACAATTGGAGCAAATCAGAATCACATTAAAAT
GTCTCTGAAAGATGAAGACAAGCTGCTTGACTGTGTCGGTTTTCATCAAGGTCAATTAAAAGAAGAAATTGTCACAGGTA
GCCGTATTTCCGTCATTGGTGAAATGTCCATCAATGAATGGAATAACCGGAAGAAACCACAGCTCATGCTAAAAGATGCC
CGAGTAGATGAATGGCAGTTGTTTGATTTGCGCGGCAAAAAGGATTGGGAAAAGACCATTTTCACGCTTGATCCAGAAAA
ATATGTGGTGGTCTGTTTTGATGAAGATACAAAACAGGAAGTCAATATCCCGATTCACCATGTCCACGCAGAAAATGTTT
CAACATTCGATGTAGAAGGCAAGTATGTCGTTTTTGCAGATGTACCTGCAGATGAACACTTGCTAAGGCAGCTGTTAGAA
AATCAAAAGCCAGCGAGAGTGTATACGGTTTTCCAAAGAAAAGAAGATCATTTCATGTCCTCTTTCCCTAGCCGTGATCA
ATTCAAATGGTTGTATGGCTTCTTGTTGAAACGAGGAAGTTTCCCTCTCAAGGAACAAGGAATGGAGCTTGCGAAACATA
GAGGCTGGACAAAAGATACAATGATTTTTATGACAAAGGTGTTTTTTGAACTCGGTTTTGTTAAAATAGAGAATGGTGTG
CTGTCAATAGTTCATGATGCCCCTAAAAAAGATTTAACGGCATCAGCATCCTATACAGCAAAACAACGATTGATGGAACT
CGATCAAACACTAACTTATTCCTCAGCTAAAGAGCTGAAGGAATGGCTGAATAGCATGATGAGCGAAGTCTCACCTGTGC
TTTGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(309-437)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-763)

RecJ OB domain (RecJ_OB)

(453-559)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

67.568

100

0.678

Multiple sequence alignment