Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB0R75_RS07745 Genome accession   NZ_CP160232
Coordinates   1559639..1560418 (+) Length   259 a.a.
NCBI ID   WP_144521404.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ1622     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1554639..1565418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R75_RS07725 (AB0R75_07725) trmFO 1555343..1556647 (+) 1305 WP_211063841.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB0R75_RS07730 (AB0R75_07730) xerC 1556710..1557627 (+) 918 WP_144521400.1 tyrosine recombinase XerC -
  AB0R75_RS07735 (AB0R75_07735) hslV 1557642..1558187 (+) 546 WP_144521402.1 ATP-dependent protease subunit HslV -
  AB0R75_RS07740 (AB0R75_07740) hslU 1558204..1559604 (+) 1401 WP_012009950.1 HslU--HslV peptidase ATPase subunit -
  AB0R75_RS07745 (AB0R75_07745) codY 1559639..1560418 (+) 780 WP_144521404.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB0R75_RS07750 (AB0R75_07750) flgB 1560705..1561094 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  AB0R75_RS07755 (AB0R75_07755) flgC 1561094..1561546 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  AB0R75_RS07760 (AB0R75_07760) fliE 1561558..1561875 (+) 318 WP_003212183.1 flagellar hook-basal body complex protein FliE -
  AB0R75_RS07765 (AB0R75_07765) fliF 1561925..1563517 (+) 1593 WP_144521406.1 flagellar basal-body MS-ring/collar protein FliF -
  AB0R75_RS07770 (AB0R75_07770) fliG 1563529..1564545 (+) 1017 WP_034317753.1 flagellar motor switch protein FliG -
  AB0R75_RS07775 (AB0R75_07775) fliH 1564538..1565302 (+) 765 WP_211063840.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29030.29 Da        Isoelectric Point: 4.6614

>NTDB_id=1020262 AB0R75_RS07745 WP_144521404.1 1559639..1560418(+) (codY) [Bacillus pumilus strain JJ1622]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTVVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1020262 AB0R75_RS07745 WP_144521404.1 1559639..1560418(+) (codY) [Bacillus pumilus strain JJ1622]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGATCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTTCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCGTTGTTCCAATTATCGGCGGAGGAGATCGTTTAGGAACGTTAATCCTGTCTCGTTTGCAAGATA
CATTTAAAGACGATGATTTAATTCTTGCTGAATACGGAGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCAATTAGTTCTCTATCATATAGTGAGCTTGAAGCCAT
TGAACACATCTTTGAAGAGCTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATTACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCTGGCGTCATCGAATCACGCTCTCTTGGAATGAAGGGAACA
TATATCAAAGTGTTAAACAACAAATTTTTAATCGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment