Detailed information NTG1020193

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB0R72_RS08995
• Genome accession: NZ_CP160229
• Coordinates: 1790530..1791309 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain AP46
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1785530..1796309

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R72_RS08975 (AB0R72_08975)	trmFO	1786217..1787524 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
AB0R72_RS08980 (AB0R72_08980)	xerC	1787594..1788511 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
AB0R72_RS08985 (AB0R72_08985)	hslV	1788527..1789072 (+)	546	WP_241458200.1	ATP-dependent protease subunit HslV	-
AB0R72_RS08990 (AB0R72_08990)	hslU	1789080..1790492 (+)	1413	WP_254894347.1	HslU--HslV peptidase ATPase subunit	-
AB0R72_RS08995 (AB0R72_08995)	codY	1790530..1791309 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB0R72_RS09000 (AB0R72_09000)	flgB	1791663..1792052 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
AB0R72_RS09005 (AB0R72_09005)	flgC	1792052..1792504 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
AB0R72_RS09010 (AB0R72_09010)	fliE	1792515..1792835 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
AB0R72_RS09015 (AB0R72_09015)	fliF	1792878..1794488 (+)	1611	WP_199022520.1	flagellar basal-body MS-ring/collar protein FliF	-
AB0R72_RS09020 (AB0R72_09020)	fliG	1794501..1795517 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
AB0R72_RS09025 (AB0R72_09025)	fliH	1795510..1796265 (+)	756	WP_015239852.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1020193 AB0R72_RS08995 WP_003154263.1 1790530..1791309(+) (codY) [Bacillus velezensis strain AP46]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1020193 AB0R72_RS08995 WP_003154263.1 1790530..1791309(+) (codY) [Bacillus velezensis strain AP46]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCTTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471