Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   DQM70_RS02280 Genome accession   NZ_LS483358
Coordinates   499454..500794 (+) Length   446 a.a.
NCBI ID   WP_005603748.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain NCTC11384     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 494454..505794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM70_RS02250 (NCTC11384_00456) msrB 494916..495311 (-) 396 WP_005620040.1 peptide-methionine (R)-S-oxide reductase MsrB -
  DQM70_RS02255 (NCTC11384_00457) gap 495534..496538 (+) 1005 WP_005619027.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  DQM70_RS02265 (NCTC11384_00459) - 496735..497787 (+) 1053 WP_005607179.1 rod shape-determining protein -
  DQM70_RS02270 (NCTC11384_00460) mreC 497904..498953 (+) 1050 WP_005596505.1 rod shape-determining protein MreC -
  DQM70_RS02275 (NCTC11384_00461) mreD 498953..499441 (+) 489 WP_005596506.1 rod shape-determining protein MreD -
  DQM70_RS02280 (NCTC11384_00462) rarA 499454..500794 (+) 1341 WP_005603748.1 replication-associated recombination protein A Machinery gene
  DQM70_RS02285 (NCTC11384_00463) znuB 500875..501660 (+) 786 WP_005596508.1 zinc ABC transporter permease subunit ZnuB -
  DQM70_RS02290 (NCTC11384_00464) - 501840..502637 (+) 798 WP_005603751.1 class II glutamine amidotransferase -
  DQM70_RS02295 (NCTC11384_00465) metX 502717..503793 (-) 1077 WP_005619029.1 homoserine O-acetyltransferase MetX -
  DQM70_RS02300 (NCTC11384_00466) - 504085..504774 (+) 690 WP_043990877.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50223.85 Da        Isoelectric Point: 6.6974

>NTDB_id=1020132 DQM70_RS02280 WP_005603748.1 499454..500794(+) (rarA) [Actinobacillus pleuropneumoniae strain NCTC11384]
MSSLSFDFSEDFRPLPARMRPRTLAEYIGQAHLIGEGKPLRRAIEAGHSHSMIFWGPPGTGKTTLAEIIAHHFDAEVERL
SAVTSGVKEIREAIERAKLNRQTGRRTLLFVDEVHRFNKSQQDAFLPHIEDGTIIFIGATTENPSFELNNALLSRAKIYI
LKPLQAVEIAQVLTNALYDKERGLGNESYYIEDNVIELLADYVNGDARFALNCLELMSDMAEISPQGKHLNKALLAEVLG
ERQARFDKGGDRYYDLISALHKSVRGSSPDGALYWYARILTAGGDPLYVARRLLAIASEDIGNADPRAMQVAINAWDCYT
RVGAYEGERAIAQAVIYLAVAPKSNAVYNAFNEAKRLAKEGKDYDVPEHLRNAPTKLMKSLGYGEEYRYAHHEPNAYAAG
ENYFPPELKDTVFYHPTERGMEKQIKEKLQWLNAQDQASLQQRYKR

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=1020132 DQM70_RS02280 WP_005603748.1 499454..500794(+) (rarA) [Actinobacillus pleuropneumoniae strain NCTC11384]
ATGAGTAGTTTGTCCTTTGATTTTTCAGAAGATTTTAGACCGCTGCCCGCCAGAATGCGTCCACGCACACTGGCGGAGTA
TATCGGGCAAGCTCATCTTATCGGAGAAGGTAAACCGCTACGCCGCGCGATAGAAGCGGGACATTCTCATTCCATGATCT
TCTGGGGGCCTCCCGGCACCGGTAAAACGACGTTAGCGGAAATTATCGCGCATCATTTTGATGCGGAAGTGGAACGCCTT
TCTGCGGTTACCAGCGGTGTGAAGGAAATCAGAGAAGCGATAGAGCGGGCTAAGCTCAATCGACAAACCGGCAGACGAAC
ATTACTTTTTGTCGATGAAGTACACCGCTTTAATAAAAGCCAACAAGACGCTTTTCTGCCGCATATTGAAGACGGCACCA
TTATTTTTATCGGTGCGACAACCGAGAATCCATCCTTTGAATTAAATAACGCCTTACTTTCCCGTGCGAAAATCTATATT
TTAAAACCGTTGCAAGCGGTTGAAATTGCACAAGTTTTAACTAATGCGCTTTACGATAAAGAACGAGGCTTAGGTAATGA
AAGCTATTACATCGAAGATAATGTGATTGAATTACTCGCCGATTACGTAAATGGGGATGCGAGATTCGCTTTAAATTGCT
TAGAACTGATGTCGGATATGGCAGAGATTTCCCCTCAAGGAAAACACCTGAATAAAGCATTGTTAGCCGAAGTATTGGGA
GAGCGACAAGCTCGATTTGATAAAGGCGGCGATCGTTACTATGATTTAATCTCGGCATTGCATAAGTCGGTACGGGGCTC
ATCACCGGACGGCGCGTTGTATTGGTATGCGAGAATTTTAACCGCAGGCGGCGATCCTTTGTATGTTGCGCGCCGATTAT
TGGCAATCGCTTCGGAAGATATTGGCAATGCTGACCCTAGAGCGATGCAAGTTGCGATTAACGCTTGGGATTGCTATACC
CGAGTCGGGGCTTACGAAGGTGAAAGAGCGATTGCGCAAGCGGTGATTTATTTGGCGGTTGCGCCTAAAAGTAATGCGGT
TTATAACGCTTTCAATGAAGCGAAACGTCTTGCGAAAGAGGGCAAAGATTACGATGTACCGGAACATCTGCGCAATGCAC
CGACTAAGTTGATGAAATCGTTAGGTTATGGTGAAGAGTATCGTTACGCACATCATGAACCGAACGCTTATGCCGCCGGC
GAAAACTACTTCCCGCCGGAATTAAAAGATACGGTATTTTATCACCCGACGGAACGGGGAATGGAAAAGCAAATTAAGGA
AAAATTGCAGTGGCTTAATGCACAGGATCAAGCCAGCTTACAACAACGTTACAAACGGTAA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(19-143)

MgsA AAA+ ATPase C terminal (MgsA_C)

(266-432)

AAA C-terminal domain (AAA_assoc_2)

(186-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

41.135

94.843

0.39