Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB0R77_RS07730 Genome accession   NZ_CP160226
Coordinates   1518738..1519517 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus safensis strain JJ1244     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1513738..1524517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R77_RS07710 (AB0R77_07710) trmFO 1514442..1515746 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB0R77_RS07715 (AB0R77_07715) xerC 1515809..1516726 (+) 918 WP_034281771.1 tyrosine recombinase XerC -
  AB0R77_RS07720 (AB0R77_07720) hslV 1516741..1517286 (+) 546 WP_034281773.1 ATP-dependent protease subunit HslV -
  AB0R77_RS07725 (AB0R77_07725) hslU 1517303..1518703 (+) 1401 WP_024424180.1 HslU--HslV peptidase ATPase subunit -
  AB0R77_RS07730 (AB0R77_07730) codY 1518738..1519517 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB0R77_RS07735 (AB0R77_07735) flgB 1519806..1520195 (+) 390 WP_046310927.1 flagellar basal body rod protein FlgB -
  AB0R77_RS07740 (AB0R77_07740) flgC 1520195..1520647 (+) 453 WP_024424179.1 flagellar basal body rod protein FlgC -
  AB0R77_RS07745 (AB0R77_07745) fliE 1520659..1520976 (+) 318 WP_034281774.1 flagellar hook-basal body complex protein FliE -
  AB0R77_RS07750 (AB0R77_07750) fliF 1521026..1522618 (+) 1593 WP_024424177.1 flagellar basal-body MS-ring/collar protein FliF -
  AB0R77_RS07755 (AB0R77_07755) fliG 1522630..1523646 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  AB0R77_RS07760 (AB0R77_07760) fliH 1523639..1524403 (+) 765 WP_034281779.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=1020049 AB0R77_RS07730 WP_007499612.1 1518738..1519517(+) (codY) [Bacillus safensis strain JJ1244]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1020049 AB0R77_RS07730 WP_007499612.1 1518738..1519517(+) (codY) [Bacillus safensis strain JJ1244]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAAGAAAT
GGCAGAAACACTAAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGGGGAAAGCTTCTTGGCTACTCCATTA
ATCAGCAGATCGAAAATGCACGTATGAAAAAAATGCTAGAAGATCGTCAGTTCCCTGAGGAATATACAAAGAGTCTATTC
AATGTCCCTGAAACGTCTTCAAACCTTGATATTAACAGTGAATATACAGCTTTCCCGATTGAGAACCGTGACTTATTCCA
ATCAGGCTTAACAACAATTGTCCCAATTATCGGCGGAGGAGATCGTTTAGGTACGTTAATCCTGTCCCGCTTACAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGGGCAACAGTTGTTGGAATGGAGATTCTTCGCGAGAAAGCAGAG
GAAATCGAAGAAGAAGCAAGAAGCAAAGCGGTTGTCCAAATGGCGATTAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCACATTTTTGAAGAGCTGGATGGAAACGAAGGTCTTCTTGTCGCAAGTAAAATTGCAGATCGTGTAGGGATTACGC
GTTCAGTGATCGTAAACGCCTTACGTAAGTTAGAAAGTGCAGGCGTAATCGAATCTCGTTCTCTTGGAATGAAAGGAACG
TACATCAAAGTGTTAAACAACAAATTTTTAATTGAACTCGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment