Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB0R77_RS07700 Genome accession   NZ_CP160226
Coordinates   1511200..1512102 (+) Length   300 a.a.
NCBI ID   WP_046310923.1    Uniprot ID   -
Organism   Bacillus safensis strain JJ1244     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1506200..1517102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R77_RS07680 (AB0R77_07680) - 1506864..1508603 (+) 1740 WP_046310920.1 hypothetical protein -
  AB0R77_RS07685 (AB0R77_07685) - 1508600..1508875 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  AB0R77_RS07690 (AB0R77_07690) sucC 1509051..1510211 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  AB0R77_RS07695 (AB0R77_07695) sucD 1510234..1511136 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  AB0R77_RS07700 (AB0R77_07700) dprA 1511200..1512102 (+) 903 WP_046310923.1 DNA-processing protein DprA Machinery gene
  AB0R77_RS07705 (AB0R77_07705) topA 1512296..1514371 (+) 2076 WP_041108973.1 type I DNA topoisomerase -
  AB0R77_RS07710 (AB0R77_07710) trmFO 1514442..1515746 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB0R77_RS07715 (AB0R77_07715) xerC 1515809..1516726 (+) 918 WP_034281771.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34213.61 Da        Isoelectric Point: 8.8727

>NTDB_id=1020048 AB0R77_RS07700 WP_046310923.1 1511200..1512102(+) (dprA) [Bacillus safensis strain JJ1244]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRELQTIDFTRLKKAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHEQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTEPT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1020048 AB0R77_RS07700 WP_046310923.1 1511200..1512102(+) (dprA) [Bacillus safensis strain JJ1244]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGAGTTACAAACGATCGACTTTACCC
GCTTAAAAAAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGATGATTGTCAGTGGTTTAGCTAAAGGAATTGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGTTTTCAGCATTTATACCCAAAAGAGCATGA
GCAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCACCCTCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCACTGACGAAAGGAACCATCGTGATACAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAGGTATTTGCGGTTGCTGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCAACAAAAGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACCAACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.208

96

0.53

Multiple sequence alignment