Detailed information NTG1019979

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB0R65_RS08275
• Genome accession: NZ_CP160225
• Coordinates: 1638360..1639139 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain JJ1284
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1633360..1644139

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R65_RS08255 (AB0R65_08255)	trmFO	1634047..1635354 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
AB0R65_RS08260 (AB0R65_08260)	xerC	1635424..1636341 (+)	918	WP_015239850.1	tyrosine recombinase XerC	-
AB0R65_RS08265 (AB0R65_08265)	hslV	1636357..1636902 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
AB0R65_RS08270 (AB0R65_08270)	hslU	1636910..1638322 (+)	1413	WP_256052823.1	HslU--HslV peptidase ATPase subunit	-
AB0R65_RS08275 (AB0R65_08275)	codY	1638360..1639139 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB0R65_RS08280 (AB0R65_08280)	flgB	1639493..1639882 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
AB0R65_RS08285 (AB0R65_08285)	flgC	1639882..1640334 (+)	453	WP_015239851.1	flagellar basal body rod protein FlgC	-
AB0R65_RS08290 (AB0R65_08290)	fliE	1640345..1640665 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
AB0R65_RS08295 (AB0R65_08295)	fliF	1640708..1642318 (+)	1611	WP_032871472.1	flagellar basal-body MS-ring/collar protein FliF	-
AB0R65_RS08300 (AB0R65_08300)	fliG	1642331..1643347 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
AB0R65_RS08305 (AB0R65_08305)	fliH	1643340..1644095 (+)	756	WP_033574573.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1019979 AB0R65_RS08275 WP_003154263.1 1638360..1639139(+) (codY) [Bacillus velezensis strain JJ1284]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1019979 AB0R65_RS08275 WP_003154263.1 1638360..1639139(+) (codY) [Bacillus velezensis strain JJ1284]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471