Detailed information NTG1019924

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: AB0R87_RS12425
• Genome accession: NZ_CP160224
• Coordinates: 2433548..2435932 (-)
• Length: 794 a.a.
• NCBI ID: WP_366596131.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain JJ950
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2428548..2440932

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R87_RS12390 (AB0R87_12390)	-	2429610..2430338 (+)	729	WP_050943677.1	amino acid ABC transporter ATP-binding protein	-
AB0R87_RS12395 (AB0R87_12395)	-	2430352..2431161 (+)	810	WP_050943676.1	transporter substrate-binding domain-containing protein	-
AB0R87_RS12400 (AB0R87_12400)	-	2431242..2431895 (+)	654	WP_003216507.1	amino acid ABC transporter permease	-
AB0R87_RS12405 (AB0R87_12405)	-	2431911..2432561 (+)	651	WP_003216394.1	amino acid ABC transporter permease	-
AB0R87_RS12410 (AB0R87_12410)	-	2432597..2432728 (-)	132	WP_003216198.1	YrzQ family protein	-
AB0R87_RS12415 (AB0R87_12415)	-	2432749..2432940 (-)	192	WP_003216308.1	hypothetical protein	-
AB0R87_RS12420 (AB0R87_12420)	-	2432954..2433472 (-)	519	WP_212046162.1	prc-barrel domain-containing protein	-
AB0R87_RS12425 (AB0R87_12425)	recD2	2433548..2435932 (-)	2385	WP_366596131.1	ATP-dependent RecD-like DNA helicase	Machinery gene
AB0R87_RS12430 (AB0R87_12430)	-	2435952..2436605 (-)	654	WP_003216571.1	tetratricopeptide repeat protein	-
AB0R87_RS12435 (AB0R87_12435)	mnmA	2436666..2437784 (-)	1119	WP_366596133.1	tRNA 2-thiouridine(34) synthase MnmA	-
AB0R87_RS12440 (AB0R87_12440)	-	2437880..2439022 (-)	1143	WP_366596135.1	cysteine desulfurase family protein	-
AB0R87_RS12445 (AB0R87_12445)	-	2439041..2439460 (-)	420	WP_034620651.1	Rrf2 family transcriptional regulator	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 89090.63 Da
• Isoelectric Point: 5.1580

>NTDB_id=1019924 AB0R87_RS12425 WP_366596131.1 2433548..2435932(-) (recD2) [Bacillus pumilus strain JJ950]
MQEHPDQMKLEDEPFLKGTVQAVIFHNESNLYSVLKVKVIETSENLEEKTASVTGYFPALHEEETYTFYGKVTSHPKFGE
QFQATHFQKEVPTTKQGIIHYLSSDLFEGIGKKTAEEIVGQLGNQTLHKIMRDPAVLYDVPRLSKKKADKLAAALQEHQG
LEQIMISLNQYGFGPQLSMKIYQVYESETLQKIEENPYQLVKDVEGIGFIKADELGARTGISGNDPERIRAALLYTVETA
SLQDGHTYIQTKDLIVETRKLLNQTGNEYKVTEMDVANQIIALGEGKEMIIEDERCYHPSLFYAEQSVAKRIQKIVSQTE
YADQFPESEFLLALGELEERLGVQYAPTQKEAIQKALMSPMLLLTGGPGTGKTTVIKGIVELYSDLHGVSLDPSDYKKDE
SFPFVLAAPTGRAAKRMTESTGLPAVTIHRLLGWNGSEGFSHDEEQPIEGKLVIIDESSMLDIWLANHLFKAIPDHIQVI
MVGDEHQLPSVGPGQVLRDLLASQAVPAVTLTDIYRQADGSSIVELAHDMKNGVLPKDITARSKDRSFIKCSVDQMKEVI
EKVVSNAAQKGYSAKDIQVLAPMYKGKAGINELNKMLQHILNPKKPKGREIPFGDVVYRTGDKVLQLVNQPENNIFNGDI
GEIVSIFYAKENTEKEDMAVVSFDGNEITFTKKDFHQFTHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLRRNLLYTAITR
SKKFLILCGEESALEWGVKNNEDSLRQTSLTMRLMQTEEVMDAELAALQKELPFSVHDANIGMEGITPFDFMYE

Nucleotide

• Length: 2385 bp

>NTDB_id=1019924 AB0R87_RS12425 WP_366596131.1 2433548..2435932(-) (recD2) [Bacillus pumilus strain JJ950]
GTGCAGGAACATCCAGATCAAATGAAGCTTGAGGACGAACCGTTTTTAAAGGGGACAGTTCAAGCCGTTATTTTCCATAA
TGAAAGTAATTTATACTCGGTGTTAAAGGTGAAAGTCATTGAAACATCGGAAAACTTAGAGGAAAAAACAGCATCTGTCA
CAGGCTACTTCCCAGCACTTCATGAGGAAGAAACTTACACCTTCTATGGCAAAGTCACAAGCCACCCGAAATTTGGTGAA
CAGTTTCAGGCTACTCATTTTCAAAAGGAAGTACCGACAACAAAGCAAGGAATCATTCATTATCTCTCAAGTGATTTATT
CGAAGGGATAGGGAAAAAGACGGCGGAAGAAATTGTGGGGCAGCTTGGCAATCAGACGCTTCATAAAATTATGCGTGACC
CAGCTGTTTTGTATGACGTTCCGCGCTTATCAAAAAAGAAGGCAGATAAGCTGGCCGCAGCGCTCCAGGAGCATCAAGGA
TTGGAACAAATCATGATCAGCCTGAATCAATATGGCTTTGGTCCACAGCTCAGCATGAAGATATATCAAGTGTACGAGAG
TGAGACGCTGCAGAAGATTGAAGAAAACCCTTATCAGCTCGTCAAGGATGTCGAAGGAATCGGATTTATTAAGGCGGATG
AACTTGGCGCTAGAACCGGTATCTCAGGAAATGACCCAGAGCGAATCCGTGCAGCCTTGCTTTATACAGTGGAGACAGCC
AGCCTTCAGGACGGTCATACGTACATACAAACAAAGGATTTGATCGTCGAAACCCGAAAACTGCTCAATCAGACAGGCAA
TGAGTACAAAGTGACGGAAATGGACGTCGCCAATCAGATCATTGCACTTGGCGAAGGGAAAGAGATGATCATTGAAGATG
AGCGCTGCTATCATCCGTCCTTATTTTATGCCGAGCAAAGTGTCGCCAAACGTATACAAAAAATCGTCTCCCAAACGGAA
TATGCAGACCAATTCCCTGAATCAGAATTCCTTCTAGCCCTTGGTGAGCTAGAGGAACGGCTGGGTGTCCAGTATGCACC
GACACAAAAAGAAGCGATTCAAAAGGCGCTCATGTCCCCAATGCTGCTTTTAACAGGCGGACCTGGGACTGGGAAGACAA
CAGTCATTAAAGGGATTGTTGAGCTTTACAGCGATCTTCACGGTGTATCTCTTGATCCGAGTGATTACAAAAAAGATGAA
TCCTTTCCATTTGTGCTTGCGGCGCCAACTGGACGAGCAGCTAAACGAATGACAGAATCAACAGGGCTTCCAGCTGTGAC
GATTCACCGGCTGCTTGGTTGGAATGGGTCAGAGGGATTCTCGCATGATGAAGAACAGCCGATTGAAGGAAAGCTTGTCA
TCATTGATGAATCAAGCATGCTAGATATTTGGCTTGCGAATCACTTGTTTAAAGCCATTCCTGATCATATCCAAGTGATC
ATGGTGGGGGATGAACATCAGCTTCCGTCTGTCGGACCAGGCCAAGTGTTAAGAGACTTGCTTGCATCACAAGCTGTGCC
AGCTGTTACCCTGACAGATATTTACCGTCAGGCAGACGGCTCCAGCATTGTTGAGCTTGCACATGATATGAAAAATGGCG
TCCTGCCAAAGGATATTACCGCACGTTCAAAGGATCGATCTTTCATAAAATGCTCAGTTGATCAAATGAAAGAAGTGATT
GAGAAAGTCGTCAGCAATGCTGCTCAAAAAGGCTATTCAGCTAAAGACATTCAAGTGCTTGCGCCCATGTATAAAGGAAA
AGCAGGCATTAATGAGCTCAATAAAATGCTGCAGCACATTTTAAATCCTAAAAAACCAAAGGGCAGAGAAATCCCATTTG
GTGATGTGGTGTACCGGACCGGTGATAAAGTGCTTCAGCTTGTGAATCAGCCGGAGAACAATATTTTTAACGGTGATATT
GGCGAAATTGTCTCGATTTTTTATGCGAAAGAAAACACGGAAAAAGAAGACATGGCTGTGGTCTCCTTTGATGGGAATGA
AATCACCTTTACAAAAAAGGATTTTCATCAATTTACACATGCCTATTGCTGCTCCATCCACAAATCACAAGGCAGTGAAT
TCCCCATCGTTGTGCTTCCAGTCGTGAGAAGCTACTACAGAATGCTTCGGCGAAATCTGCTGTACACAGCCATTACACGA
AGTAAAAAGTTTTTAATTCTGTGCGGCGAGGAATCAGCACTGGAGTGGGGCGTGAAAAACAATGAGGATTCGCTCAGACA
AACGTCCTTAACGATGCGGCTCATGCAAACCGAAGAGGTTATGGATGCGGAGCTTGCAGCACTTCAAAAAGAACTGCCGT
TTAGCGTGCATGATGCAAATATCGGTATGGAGGGAATCACTCCATTTGATTTTATGTATGAATAA

Domains

Predicted by InterproScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-728)

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-248)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-661)

• AAA domain (AAA_30) (345-552)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	80.126	100	0.802