Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   AB0R87_RS07925 Genome accession   NZ_CP160224
Coordinates   1584734..1585513 (+) Length   259 a.a.
NCBI ID   WP_003210838.1    Uniprot ID   -
Organism   Bacillus pumilus strain JJ950     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1579734..1590513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R87_RS07905 (AB0R87_07905) trmFO 1580438..1581742 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AB0R87_RS07910 (AB0R87_07910) xerC 1581805..1582722 (+) 918 WP_003211704.1 tyrosine recombinase XerC -
  AB0R87_RS07915 (AB0R87_07915) hslV 1582737..1583282 (+) 546 WP_003211247.1 ATP-dependent protease subunit HslV -
  AB0R87_RS07920 (AB0R87_07920) hslU 1583299..1584699 (+) 1401 WP_003211907.1 HslU--HslV peptidase ATPase subunit -
  AB0R87_RS07925 (AB0R87_07925) codY 1584734..1585513 (+) 780 WP_003210838.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  AB0R87_RS07930 (AB0R87_07930) flgB 1585800..1586189 (+) 390 WP_012009952.1 flagellar basal body rod protein FlgB -
  AB0R87_RS07935 (AB0R87_07935) flgC 1586189..1586641 (+) 453 WP_012009953.1 flagellar basal body rod protein FlgC -
  AB0R87_RS07940 (AB0R87_07940) fliE 1586653..1586970 (+) 318 WP_003212183.1 flagellar hook-basal body complex protein FliE -
  AB0R87_RS07945 (AB0R87_07945) fliF 1587020..1588612 (+) 1593 WP_366597484.1 flagellar basal-body MS-ring/collar protein FliF -
  AB0R87_RS07950 (AB0R87_07950) fliG 1588624..1589640 (+) 1017 WP_003210883.1 flagellar motor switch protein FliG -
  AB0R87_RS07955 (AB0R87_07955) fliH 1589633..1590397 (+) 765 WP_003212485.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29060.31 Da        Isoelectric Point: 4.6614

>NTDB_id=1019912 AB0R87_RS07925 WP_003210838.1 1584734..1585513(+) (codY) [Bacillus pumilus strain JJ950]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFESGLTTIVPIIGGGDRLGTLILSRLQDTFKDDDLILAEYGATVVGMEILREKSE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1019912 AB0R87_RS07925 WP_003210838.1 1584734..1585513(+) (codY) [Bacillus pumilus strain JJ950]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCAATGCTGCAAGATGCAGCGGGGAAACCAGTTAATTTTAAGGAAAT
GGCAGAAACGTTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTAGGCTACTCGATCA
ACCAGCAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTT
AACATCCCTGAAACATCTTCAAATCTTGACATTAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTTGA
ATCAGGTTTGACAACCATTGTTCCAATTATCGGAGGAGGAGATCGTTTAGGGACGTTAATCCTGTCTCGTTTGCAAGATA
CATTCAAAGATGATGATTTAATTCTTGCTGAATACGGTGCAACAGTTGTTGGAATGGAGATCCTTCGTGAGAAATCAGAG
GAAATTGAAGAAGAAGCAAGAAGTAAAGCTGTTGTCCAAATGGCGATTAGTTCTCTTTCATATAGTGAGCTTGAAGCCAT
TGAGCACATCTTTGAAGAACTTGATGGCAACGAAGGGCTTCTAGTGGCAAGTAAAATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTGAACGCCTTACGTAAGTTAGAAAGTGCAGGAGTCATCGAATCTCGTTCTCTTGGAATGAAGGGAACG
TATATCAAAGTGTTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

95.367

100

0.954
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471

Multiple sequence alignment