Detailed information NTG1019537

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB0R89_RS08030
• Genome accession: NZ_CP160218
• Coordinates: 1657547..1658326 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain AP45
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1652547..1663326

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R89_RS08010 (AB0R89_08010)	trmFO	1653234..1654541 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
AB0R89_RS08015 (AB0R89_08015)	xerC	1654611..1655528 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
AB0R89_RS08020 (AB0R89_08020)	hslV	1655544..1656089 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
AB0R89_RS08025 (AB0R89_08025)	hslU	1656097..1657509 (+)	1413	WP_256052823.1	HslU--HslV peptidase ATPase subunit	-
AB0R89_RS08030 (AB0R89_08030)	codY	1657547..1658326 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB0R89_RS08035 (AB0R89_08035)	flgB	1658680..1659069 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
AB0R89_RS08040 (AB0R89_08040)	flgC	1659069..1659521 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
AB0R89_RS08045 (AB0R89_08045)	fliE	1659532..1659852 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
AB0R89_RS08050 (AB0R89_08050)	fliF	1659895..1661505 (+)	1611	WP_012117551.1	flagellar basal-body MS-ring/collar protein FliF	-
AB0R89_RS08055 (AB0R89_08055)	fliG	1661518..1662534 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
AB0R89_RS08060 (AB0R89_08060)	fliH	1662527..1663282 (+)	756	WP_015239852.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1019537 AB0R89_RS08030 WP_003154263.1 1657547..1658326(+) (codY) [Bacillus velezensis strain AP45]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1019537 AB0R89_RS08030 WP_003154263.1 1657547..1658326(+) (codY) [Bacillus velezensis strain AP45]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471