Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | AB0R74_RS08280 | Genome accession | NZ_CP160216 |
| Coordinates | 1631401..1632180 (+) | Length | 259 a.a. |
| NCBI ID | WP_003154263.1 | Uniprot ID | I2C545 |
| Organism | Bacillus velezensis strain JJ1043 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1599602..1634674 | 1631401..1632180 | within | 0 |
Gene organization within MGE regions
Location: 1599602..1634674
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB0R74_RS08125 (AB0R74_08125) | sdaAA | 1600134..1601036 (+) | 903 | WP_007409756.1 | L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha | - |
| AB0R74_RS08130 (AB0R74_08130) | recG | 1601014..1603062 (+) | 2049 | WP_020955813.1 | ATP-dependent DNA helicase RecG | - |
| AB0R74_RS08135 (AB0R74_08135) | fapR | 1603169..1603735 (+) | 567 | WP_003154320.1 | transcription factor FapR | - |
| AB0R74_RS08140 (AB0R74_08140) | plsX | 1603749..1604747 (+) | 999 | WP_007409758.1 | phosphate acyltransferase PlsX | - |
| AB0R74_RS08145 (AB0R74_08145) | fabD | 1604766..1605719 (+) | 954 | WP_007409759.1 | ACP S-malonyltransferase | - |
| AB0R74_RS08150 (AB0R74_08150) | fabG | 1605712..1606452 (+) | 741 | WP_003154312.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| AB0R74_RS08155 (AB0R74_08155) | acpP | 1606537..1606770 (+) | 234 | WP_003154310.1 | acyl carrier protein | - |
| AB0R74_RS08160 (AB0R74_08160) | rncS | 1606909..1607658 (+) | 750 | WP_007409760.1 | ribonuclease III | - |
| AB0R74_RS08165 (AB0R74_08165) | smc | 1607760..1611320 (+) | 3561 | WP_061046791.1 | chromosome segregation protein SMC | - |
| AB0R74_RS08170 (AB0R74_08170) | ftsY | 1611340..1612329 (+) | 990 | WP_003154301.1 | signal recognition particle-docking protein FtsY | - |
| AB0R74_RS08175 (AB0R74_08175) | - | 1612413..1613056 (+) | 644 | Protein_1554 | phosphotransferase | - |
| AB0R74_RS08180 (AB0R74_08180) | - | 1613178..1613510 (+) | 333 | WP_003154299.1 | putative DNA-binding protein | - |
| AB0R74_RS08185 (AB0R74_08185) | ffh | 1613524..1614864 (+) | 1341 | WP_007409763.1 | signal recognition particle protein | - |
| AB0R74_RS08190 (AB0R74_08190) | rpsP | 1614970..1615242 (+) | 273 | WP_003154296.1 | 30S ribosomal protein S16 | - |
| AB0R74_RS08195 (AB0R74_08195) | - | 1615242..1615487 (+) | 246 | WP_007611392.1 | KH domain-containing protein | - |
| AB0R74_RS08200 (AB0R74_08200) | - | 1615578..1615964 (+) | 387 | WP_003154291.1 | YlqD family protein | - |
| AB0R74_RS08205 (AB0R74_08205) | rimM | 1615969..1616493 (+) | 525 | WP_003154290.1 | ribosome maturation factor RimM | - |
| AB0R74_RS08210 (AB0R74_08210) | trmD | 1616490..1617221 (+) | 732 | WP_007409764.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| AB0R74_RS08215 (AB0R74_08215) | rplS | 1617362..1617709 (+) | 348 | WP_003154288.1 | 50S ribosomal protein L19 | - |
| AB0R74_RS08220 (AB0R74_08220) | ylqF | 1617852..1618700 (+) | 849 | WP_007409766.1 | ribosome biogenesis GTPase YlqF | - |
| AB0R74_RS08225 (AB0R74_08225) | - | 1618773..1619540 (+) | 768 | WP_007611398.1 | ribonuclease HII | - |
| AB0R74_RS08230 (AB0R74_08230) | - | 1619557..1621260 (+) | 1704 | WP_366561507.1 | glycosyl transferase | - |
| AB0R74_RS08235 (AB0R74_08235) | - | 1621257..1621538 (+) | 282 | WP_015239847.1 | FlhB-like flagellar biosynthesis protein | - |
| AB0R74_RS08240 (AB0R74_08240) | sucC | 1621713..1622870 (+) | 1158 | WP_003154283.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| AB0R74_RS08245 (AB0R74_08245) | sucD | 1622899..1623801 (+) | 903 | WP_003154281.1 | succinate--CoA ligase subunit alpha | - |
| AB0R74_RS08250 (AB0R74_08250) | dprA | 1623867..1624766 (+) | 900 | WP_020955817.1 | DNA-processing protein DprA | Machinery gene |
| AB0R74_RS08255 (AB0R74_08255) | topA | 1624948..1627023 (+) | 2076 | WP_007409771.1 | type I DNA topoisomerase | - |
| AB0R74_RS08260 (AB0R74_08260) | trmFO | 1627088..1628395 (+) | 1308 | WP_012117550.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| AB0R74_RS08265 (AB0R74_08265) | xerC | 1628465..1629382 (+) | 918 | WP_007409774.1 | tyrosine recombinase XerC | - |
| AB0R74_RS08270 (AB0R74_08270) | hslV | 1629398..1629943 (+) | 546 | WP_003154267.1 | ATP-dependent protease subunit HslV | - |
| AB0R74_RS08275 (AB0R74_08275) | hslU | 1629951..1631363 (+) | 1413 | WP_256052823.1 | HslU--HslV peptidase ATPase subunit | - |
| AB0R74_RS08280 (AB0R74_08280) | codY | 1631401..1632180 (+) | 780 | WP_003154263.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| AB0R74_RS08285 (AB0R74_08285) | flgB | 1632534..1632923 (+) | 390 | WP_003154260.1 | flagellar basal body rod protein FlgB | - |
| AB0R74_RS08290 (AB0R74_08290) | flgC | 1632923..1633375 (+) | 453 | WP_039063101.1 | flagellar basal body rod protein FlgC | - |
| AB0R74_RS08295 (AB0R74_08295) | fliE | 1633386..1633706 (+) | 321 | WP_007409777.1 | flagellar hook-basal body complex protein FliE | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 29056.24 Da Isoelectric Point: 4.6017
>NTDB_id=1019385 AB0R74_RS08280 WP_003154263.1 1631401..1632180(+) (codY) [Bacillus velezensis strain JJ1043]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH
Nucleotide
Download Length: 780 bp
>NTDB_id=1019385 AB0R74_RS08280 WP_003154263.1 1631401..1632180(+) (codY) [Bacillus velezensis strain JJ1043]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
99.228 |
100 |
0.992 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
47.843 |
98.456 |
0.471 |