Detailed information NTG1019309

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB0R81_RS08320
• Genome accession: NZ_CP160215
• Coordinates: 1644337..1645116 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain JJ213
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1639337..1650116

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R81_RS08300 (AB0R81_08300)	trmFO	1640024..1641331 (+)	1308	WP_032871468.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
AB0R81_RS08305 (AB0R81_08305)	xerC	1641401..1642318 (+)	918	WP_032871470.1	tyrosine recombinase XerC	-
AB0R81_RS08310 (AB0R81_08310)	hslV	1642334..1642879 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
AB0R81_RS08315 (AB0R81_08315)	hslU	1642887..1644299 (+)	1413	WP_254894347.1	HslU--HslV peptidase ATPase subunit	-
AB0R81_RS08320 (AB0R81_08320)	codY	1644337..1645116 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB0R81_RS08325 (AB0R81_08325)	flgB	1645470..1645859 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
AB0R81_RS08330 (AB0R81_08330)	flgC	1645859..1646311 (+)	453	WP_015239851.1	flagellar basal body rod protein FlgC	-
AB0R81_RS08335 (AB0R81_08335)	fliE	1646322..1646642 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
AB0R81_RS08340 (AB0R81_08340)	fliF	1646685..1648295 (+)	1611	WP_012117551.1	flagellar basal-body MS-ring/collar protein FliF	-
AB0R81_RS08345 (AB0R81_08345)	fliG	1648308..1649324 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
AB0R81_RS08350 (AB0R81_08350)	fliH	1649317..1650072 (+)	756	WP_015239852.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1019309 AB0R81_RS08320 WP_003154263.1 1644337..1645116(+) (codY) [Bacillus velezensis strain JJ213]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1019309 AB0R81_RS08320 WP_003154263.1 1644337..1645116(+) (codY) [Bacillus velezensis strain JJ213]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ACCAGCAGATTGAAAATGACCGTATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTTTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471