Detailed information NTG1019159

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB0R80_RS08245
• Genome accession: NZ_CP160213
• Coordinates: 1664694..1665473 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain JM199
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1659694..1670473

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R80_RS08225 (AB0R80_08225)	trmFO	1660381..1661688 (+)	1308	WP_032871468.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
AB0R80_RS08230 (AB0R80_08230)	xerC	1661758..1662675 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
AB0R80_RS08235 (AB0R80_08235)	hslV	1662691..1663236 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
AB0R80_RS08240 (AB0R80_08240)	hslU	1663244..1664656 (+)	1413	WP_256052823.1	HslU--HslV peptidase ATPase subunit	-
AB0R80_RS08245 (AB0R80_08245)	codY	1664694..1665473 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB0R80_RS08250 (AB0R80_08250)	flgB	1665827..1666216 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
AB0R80_RS08255 (AB0R80_08255)	flgC	1666216..1666668 (+)	453	WP_007409776.1	flagellar basal body rod protein FlgC	-
AB0R80_RS08260 (AB0R80_08260)	fliE	1666679..1666999 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
AB0R80_RS08265 (AB0R80_08265)	fliF	1667042..1668652 (+)	1611	WP_012117551.1	flagellar basal-body MS-ring/collar protein FliF	-
AB0R80_RS08270 (AB0R80_08270)	fliG	1668665..1669681 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
AB0R80_RS08275 (AB0R80_08275)	fliH	1669674..1670429 (+)	756	WP_327935118.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1019159 AB0R80_RS08245 WP_003154263.1 1664694..1665473(+) (codY) [Bacillus velezensis strain JM199]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1019159 AB0R80_RS08245 WP_003154263.1 1664694..1665473(+) (codY) [Bacillus velezensis strain JM199]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471