Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BAMY6614_RS07630 Genome accession   NZ_CP006960
Coordinates   1550941..1552758 (+) Length   605 a.a.
NCBI ID   WP_014417222.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens UMAF6614     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1545941..1557758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY6614_RS07615 (BAMY6614_08015) - 1546725..1547486 (+) 762 WP_014417219.1 MurR/RpiR family transcriptional regulator -
  BAMY6614_RS07620 (BAMY6614_08020) - 1547503..1549089 (+) 1587 WP_061861982.1 alpha-glucoside-specific PTS transporter subunit IIBC -
  BAMY6614_RS07625 (BAMY6614_08025) - 1549227..1550960 (+) 1734 WP_061861983.1 ABC transporter ATP-binding protein -
  BAMY6614_RS07630 (BAMY6614_08030) rcrQ 1550941..1552758 (+) 1818 WP_014417222.1 ABC transporter ATP-binding protein Regulator
  BAMY6614_RS07635 (BAMY6614_08035) - 1552926..1553330 (+) 405 WP_012117101.1 DoxX family protein -
  BAMY6614_RS07640 (BAMY6614_08040) - 1553347..1554204 (+) 858 WP_061861984.1 VOC family protein -
  BAMY6614_RS07645 (BAMY6614_08045) cyoE 1554568..1555515 (+) 948 WP_053285212.1 heme o synthase -
  BAMY6614_RS07650 (BAMY6614_08050) - 1555551..1556102 (-) 552 WP_012117104.1 PadR family transcriptional regulator -
  BAMY6614_RS07655 (BAMY6614_08060) - 1556336..1556938 (+) 603 WP_061861985.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67441.13 Da        Isoelectric Point: 9.4321

>NTDB_id=101915 BAMY6614_RS07630 WP_014417222.1 1550941..1552758(+) (rcrQ) [Bacillus amyloliquefaciens UMAF6614]
MQKDIRKPFRYPKIPLKSNEGGRKRAKAKDTKGTLRRIWSYVAEKKGLLTLVIIMVVISAIFGLLGPFVIGKAIDHFIVG
QTTDGLAGVLFILFGIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNTSVIQVLSSVITFVGTIAVMLYMSPLLTLITLLIIPIMLLSIKWITNRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMEQFLEKNAALQSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGAIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEEHALYQPIKTGEIEFRDVSFGYQEDSLILKHLSFSVPKGQSIAFVGP
TGAGKTTVTSLIARFYEPNNGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDQEVEAAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGRLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLSQNGFYQELYESQFRES

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=101915 BAMY6614_RS07630 WP_014417222.1 1550941..1552758(+) (rcrQ) [Bacillus amyloliquefaciens UMAF6614]
ATGCAAAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTCAAATCAAATGAAGGCGGCAGAAAACGCGCGAA
AGCAAAAGATACAAAAGGCACGCTGCGCAGAATCTGGTCTTATGTAGCCGAGAAAAAAGGGCTTTTAACACTTGTGATCA
TCATGGTAGTCATAAGCGCCATATTCGGCCTGCTCGGACCGTTCGTCATCGGGAAAGCGATTGATCATTTTATCGTCGGA
CAGACGACAGACGGATTGGCGGGGGTGCTGTTCATCCTGTTTGGGATTTACCTCGTGCAATCATTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATCTCGCAAAGCACCGTGTTTAAAATGCGGAGCGAGCTGTTTACCCATCTGCATGAGCTGC
CGATTCCGTTTTTTGATAAACAGCGGCTCGGGGACTTAATGAGCCGGGTCACCAATGATATCGAAAATGTCAGCTCCACT
TTAAATACATCCGTCATTCAAGTGCTGTCGAGCGTCATTACATTCGTCGGCACAATCGCCGTCATGCTGTACATGAGTCC
GCTTTTAACATTGATCACGCTTTTGATTATTCCGATCATGCTTTTGAGCATTAAATGGATCACCAACCGGACGGGACTGC
TGTTTAAACAGCAGCAGAAAAACCTCGGCGAGCTGAACGGTTTTATTGAAGAGTCGATATCAGGGGCGAAGGTCATTAAA
GCCTATTCGAGGGAAGACCGCGTCATGGAACAATTTTTAGAAAAAAACGCGGCGTTACAATCATCGGGTTTTTGGGCGCA
GACAATTTCGGGATTCATTCCGAAAGTCATGAACTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAGGGATGGATTTCAATCGGTGCCATCGTCGTATTCGCCGAATACTCGCGGCAGTTCACGCGCCCTTTA
AATGATTTAGCCAATCAGTTCAATACGATGTTATCGGCCATCGCCGGGGCTGAACGGGTGTTTGACGTGCTGGATGAAAA
AGAGGAGCGGGAAGATGAAGAGCATGCGCTGTACCAGCCGATCAAAACGGGAGAAATTGAATTCCGAGATGTCTCCTTCG
GCTATCAGGAAGACAGCCTGATCTTAAAACACCTGTCCTTCAGCGTTCCGAAAGGACAGTCAATCGCCTTCGTCGGACCG
ACCGGAGCGGGTAAAACAACCGTTACGAGCCTGATCGCCCGTTTTTACGAGCCGAATAACGGAAAAATCCTCATTGACGG
AACGGACATCAAAAAACTGACGAGATCCAGTCTGAGAAAAAACATGGGGTTTGTCCTGCAGGATTCCTTTCTCTTTCAGG
GCACCATCAGGGAAAATATCCGTTACGGCCGTCTGGACGCATCTGATCAAGAGGTGGAGGCAGCCGCAAAAGCCGCCAAT
GCCCACGGATTCATCGAACGGCTCCCGAAAGGCTACGATACCGTCCTTACCCAAAACGGCGCGGGCATCAGCCAAGGACA
AAAACAGCTTATTTCCATCGCGAGAGCTGTGCTGGCGGACCCGGTGCTGCTCATTTTGGATGAAGCGACGAGCAACATTG
ATACGGTGACGGAAGTGAAAATACAAGAAGCGCTCGGCCGTTTAATGGCGGGCAGAACAAGCGTCATCATCGCTCACAGG
CTGAACACGATTCAAAAAGCCGATCAGATTCTTGTGCTGAAAGACGGCGAAATGGCTGAAAAAGGAACCCATGCCGAACT
TCTCAGCCAGAACGGGTTTTACCAAGAATTATATGAAAGCCAGTTCCGGGAATCATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.593

96.364

0.372

Multiple sequence alignment