Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   DQM73_RS09330 Genome accession   NZ_LS483346
Coordinates   1884191..1884967 (+) Length   258 a.a.
NCBI ID   WP_002916881.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC11085     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1879191..1889967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM73_RS09315 (NCTC11085_01829) - 1881057..1881761 (+) 705 WP_002899687.1 MIP/aquaporin family protein -
  DQM73_RS09320 (NCTC11085_01830) rlmD 1881962..1883332 (-) 1371 WP_002923449.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  DQM73_RS09325 (NCTC11085_01831) - 1883388..1884164 (+) 777 WP_002916882.1 aminoglycoside 3'-phosphotransferase -
  DQM73_RS09330 (NCTC11085_01832) recX 1884191..1884967 (+) 777 WP_002916881.1 recombination regulator RecX Regulator
  DQM73_RS09335 (NCTC11085_01833) - 1885054..1885587 (+) 534 WP_002896978.1 DUF402 domain-containing protein -
  DQM73_RS09340 (NCTC11085_01834) - 1885715..1886032 (+) 318 WP_002896977.1 DUF960 domain-containing protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30348.52 Da        Isoelectric Point: 7.3845

>NTDB_id=1019101 DQM73_RS09330 WP_002916881.1 1884191..1884967(+) (recX) [Streptococcus sanguinis strain NCTC11085]
MKITKIEKKKRLYLLELDDSEKLYITEDTIVRFMLSKGMEITEQELSEIQDYAQFSYGKNLALYHLSFKQRTAKEVKDYL
TQHDIQPEIISQVLDNLKKDNWINDRKYANSFIQSNLLTGDKGAFVLKQKLSQKGISSTIIEDELSQFDFTELTDKVAEK
LLRKYQGKLPSKALQDKILQSLINKGFSYSQAKTAYQHLEIEEDQENQQELLYKELDKQYRKYSKKYDGYDLKQHLTQAL
ARKGYDFSDIASALREYL

Nucleotide


Download         Length: 777 bp        

>NTDB_id=1019101 DQM73_RS09330 WP_002916881.1 1884191..1884967(+) (recX) [Streptococcus sanguinis strain NCTC11085]
ATGAAAATCACAAAAATCGAAAAGAAAAAAAGACTTTACCTCTTGGAGTTGGACGACAGTGAAAAGCTCTATATTACTGA
AGACACCATTGTTCGCTTCATGCTGTCCAAAGGAATGGAAATCACAGAGCAGGAGCTATCAGAAATTCAAGACTATGCGC
AATTCTCCTACGGAAAAAATCTAGCCCTCTATCATCTCTCCTTCAAGCAAAGAACTGCCAAGGAAGTTAAAGACTACTTA
ACGCAGCACGACATCCAACCAGAAATCATCAGTCAGGTCTTGGACAATCTAAAAAAGGATAATTGGATTAATGATAGAAA
ATATGCTAACTCTTTTATCCAATCCAATCTTCTCACTGGTGATAAAGGTGCTTTTGTTCTCAAACAAAAACTCAGTCAAA
AAGGGATTTCTAGCACTATCATAGAAGACGAATTGAGCCAGTTTGATTTTACTGAACTAACAGACAAGGTTGCCGAAAAG
CTGCTCAGAAAATACCAGGGAAAACTGCCCAGCAAGGCCTTACAAGATAAAATTCTTCAATCCTTGATAAACAAAGGTTT
TTCCTATAGTCAAGCCAAAACCGCCTATCAGCATTTGGAAATCGAAGAAGACCAAGAAAATCAGCAAGAGCTTCTATATA
AAGAGCTAGACAAGCAATACCGCAAGTACTCAAAAAAGTACGACGGCTATGACTTAAAACAGCATCTGACCCAAGCTCTA
GCTCGCAAAGGTTATGATTTCTCCGACATCGCTAGCGCTCTGAGAGAATATCTTTAA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

34.831

100

0.36

Multiple sequence alignment