Detailed information NTG1019083

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB0R70_RS08370
• Genome accession: NZ_CP160212
• Coordinates: 1648205..1648984 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain JM204
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1643205..1653984

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R70_RS08350 (AB0R70_08350)	trmFO	1643892..1645199 (+)	1308	WP_032871468.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
AB0R70_RS08355 (AB0R70_08355)	xerC	1645269..1646186 (+)	918	WP_032871470.1	tyrosine recombinase XerC	-
AB0R70_RS08360 (AB0R70_08360)	hslV	1646202..1646747 (+)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
AB0R70_RS08365 (AB0R70_08365)	hslU	1646755..1648167 (+)	1413	WP_256052823.1	HslU--HslV peptidase ATPase subunit	-
AB0R70_RS08370 (AB0R70_08370)	codY	1648205..1648984 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB0R70_RS08375 (AB0R70_08375)	flgB	1649338..1649727 (+)	390	WP_156735048.1	flagellar basal body rod protein FlgB	-
AB0R70_RS08380 (AB0R70_08380)	flgC	1649727..1650179 (+)	453	WP_015239851.1	flagellar basal body rod protein FlgC	-
AB0R70_RS08385 (AB0R70_08385)	fliE	1650190..1650510 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
AB0R70_RS08390 (AB0R70_08390)	fliF	1650553..1652163 (+)	1611	WP_076424137.1	flagellar basal-body MS-ring/collar protein FliF	-
AB0R70_RS08395 (AB0R70_08395)	fliG	1652176..1653192 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
AB0R70_RS08400 (AB0R70_08400)	fliH	1653185..1653940 (+)	756	WP_015239852.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1019083 AB0R70_RS08370 WP_003154263.1 1648205..1648984(+) (codY) [Bacillus velezensis strain JM204]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1019083 AB0R70_RS08370 WP_003154263.1 1648205..1648984(+) (codY) [Bacillus velezensis strain JM204]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACACTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471