Detailed information NTG1019007

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AB0R79_RS08515
• Genome accession: NZ_CP160211
• Coordinates: 1688724..1689503 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain JM236
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1683724..1694503

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB0R79_RS08495 (AB0R79_08495)	trmFO	1684411..1685718 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
AB0R79_RS08500 (AB0R79_08500)	xerC	1685788..1686705 (+)	918	WP_015239850.1	tyrosine recombinase XerC	-
AB0R79_RS08505 (AB0R79_08505)	hslV	1686721..1687266 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
AB0R79_RS08510 (AB0R79_08510)	hslU	1687274..1688686 (+)	1413	WP_256052823.1	HslU--HslV peptidase ATPase subunit	-
AB0R79_RS08515 (AB0R79_08515)	codY	1688724..1689503 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AB0R79_RS08520 (AB0R79_08520)	flgB	1689857..1690246 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
AB0R79_RS08525 (AB0R79_08525)	flgC	1690246..1690698 (+)	453	WP_015239851.1	flagellar basal body rod protein FlgC	-
AB0R79_RS08530 (AB0R79_08530)	fliE	1690709..1691029 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
AB0R79_RS08535 (AB0R79_08535)	fliF	1691072..1692682 (+)	1611	WP_032871472.1	flagellar basal-body MS-ring/collar protein FliF	-
AB0R79_RS08540 (AB0R79_08540)	fliG	1692695..1693711 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
AB0R79_RS08545 (AB0R79_08545)	fliH	1693704..1694459 (+)	756	WP_033574573.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1019007 AB0R79_RS08515 WP_003154263.1 1688724..1689503(+) (codY) [Bacillus velezensis strain JM236]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1019007 AB0R79_RS08515 WP_003154263.1 1688724..1689503(+) (codY) [Bacillus velezensis strain JM236]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471